SHOGoiN Cell Transcriptome: GSM1269276

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1269276


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6000003010000000000000-738Sequence Read ArchiveSRP033135SRP033135_T272Pseudo-temporal ordering of individual cells reveals regulators of differentiationTranscriptomeMyoblast_T72 (Skeletal muscle)HumanMuscleRNA-seqHiSeq 2000Sequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSG00000210082 MT-RNR2 mitochondrially encoded 16S RNA 127.1411
2 ENSG00000251562 MALAT1 metastasis associated lung adenocarcinoma transcript 1 (non-protein coding) 90.5774
3 ENSG00000198804 MT-CO1 mitochondrially encoded cytochrome c oxidase I 63.4198
4 ENSG00000108821 COL1A1 collagen type I alpha 1 chain 56.2885
5 ENSG00000113140 SPARC secreted protein acidic and cysteine rich 51.0369
6 ENSG00000196205 EEF1A1P5 eukaryotic translation elongation factor 1 alpha 1 pseudogene 5 45.6317
7 ENSG00000115414 FN1 fibronectin 1 33.5486
8 ENSG00000100234 TIMP3 TIMP metallopeptidase inhibitor 3 31.2812
9 ENSG00000156508 EEF1A1 eukaryotic translation elongation factor 1 alpha 1 25.8760
10 ENSG00000122786 CALD1 caldesmon 1 24.4205

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
57171 ENSG00000277077 NA -0.1040
57170 ENSG00000277075 HIST1H2AE histone cluster 1 H2A family member e -0.1040
57168 ENSG00000277073 MIR6131 microRNA 6131 -0.1040
57167 ENSG00000277066 NA -0.1040
57165 ENSG00000277063 MIR8084 microRNA 8084 -0.1040
57164 ENSG00000277062 RN7SL88P RNA, 7SL, cytoplasmic 88, pseudogene -0.1040
57162 ENSG00000277058 HNRNPCL3 heterogeneous nuclear ribonucleoprotein C-like 3 -0.1040
10 ENSG00000122786 CALD1 caldesmon 1 24.4205
9 ENSG00000156508 EEF1A1 eukaryotic translation elongation factor 1 alpha 1 25.8760
8 ENSG00000100234 TIMP3 TIMP metallopeptidase inhibitor 3 31.2812

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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