SHOGoiN Cell Transcriptome: GSM1269280

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1269280


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6000003010000000000000-738Sequence Read ArchiveSRP033135SRP033135_T275Pseudo-temporal ordering of individual cells reveals regulators of differentiationTranscriptomeMyoblast_T72 (Skeletal muscle)HumanMuscleRNA-seqHiSeq 2000Sequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSG00000210082 MT-RNR2 mitochondrially encoded 16S RNA 138.5758
2 ENSG00000251562 MALAT1 metastasis associated lung adenocarcinoma transcript 1 (non-protein coding) 93.8229
3 ENSG00000198804 MT-CO1 mitochondrially encoded cytochrome c oxidase I 65.4415
4 ENSG00000115414 FN1 fibronectin 1 64.5925
5 ENSG00000231991 ANXA2P2 annexin A2 pseudogene 2 41.2970
6 ENSG00000198712 MT-CO2 mitochondrially encoded cytochrome c oxidase II 37.0289
7 ENSG00000102265 TIMP1 TIMP metallopeptidase inhibitor 1 35.7749
8 ENSG00000091986 CCDC80 coiled-coil domain containing 80 35.0116
9 ENSG00000196205 EEF1A1P5 eukaryotic translation elongation factor 1 alpha 1 pseudogene 5 31.3510
10 ENSG00000198886 MT-ND4 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 28.0253

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
57171 ENSG00000277049 RNA5SP530 RNA, 5S ribosomal pseudogene 530 -0.0913
57169 ENSG00000277047 NA -0.0913
57167 ENSG00000277043 EEF1A1P42 eukaryotic translation elongation factor 1 alpha 1 pseudogene 42 -0.0913
57166 ENSG00000277041 NA -0.0913
57165 ENSG00000277040 NA -0.0913
57164 ENSG00000277039 NA -0.0913
57163 ENSG00000277035 NA -0.0913
57162 ENSG00000277034 NA -0.0913
10 ENSG00000198886 MT-ND4 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 28.0253
9 ENSG00000196205 EEF1A1P5 eukaryotic translation elongation factor 1 alpha 1 pseudogene 5 31.3510

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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