SHOGoiN Cell Transcriptome: GSM1269286

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1269286


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6000003010000000000000-738Sequence Read ArchiveSRP033135SRP033135_T280Pseudo-temporal ordering of individual cells reveals regulators of differentiationTranscriptomeMyoblast_T72 (Skeletal muscle)HumanMuscleRNA-seqHiSeq 2000Sequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSG00000251562 MALAT1 metastasis associated lung adenocarcinoma transcript 1 (non-protein coding) 111.6255
2 ENSG00000210082 MT-RNR2 mitochondrially encoded 16S RNA 105.0537
3 ENSG00000198804 MT-CO1 mitochondrially encoded cytochrome c oxidase I 63.4841
4 ENSG00000100234 TIMP3 TIMP metallopeptidase inhibitor 3 54.5312
5 ENSG00000108821 COL1A1 collagen type I alpha 1 chain 53.9857
6 ENSG00000159251 ACTC1 actin, alpha, cardiac muscle 1 39.7338
7 ENSG00000115414 FN1 fibronectin 1 37.6211
8 ENSG00000198712 MT-CO2 mitochondrially encoded cytochrome c oxidase II 33.8027
9 ENSG00000113140 SPARC secreted protein acidic and cysteine rich 33.6208
10 ENSG00000196205 EEF1A1P5 eukaryotic translation elongation factor 1 alpha 1 pseudogene 5 33.1533

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
57171 ENSG00000277029 RNU6-1192P RNA, U6 small nuclear 1192, pseudogene -0.1041
57170 ENSG00000277027 RMRP RNA component of mitochondrial RNA processing endoribonuclease -0.1041
57168 ENSG00000277024 NA -0.1041
57166 ENSG00000277022 NA -0.1041
57164 ENSG00000277020 NA -0.1041
57163 ENSG00000277017 NA -0.1041
57162 ENSG00000277014 MIR3179-4 microRNA 3179-4 -0.1041
10 ENSG00000196205 EEF1A1P5 eukaryotic translation elongation factor 1 alpha 1 pseudogene 5 33.1533
9 ENSG00000113140 SPARC secreted protein acidic and cysteine rich 33.6208
8 ENSG00000198712 MT-CO2 mitochondrially encoded cytochrome c oxidase II 33.8027

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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