SHOGoiN Cell Transcriptome: GSM1269301

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1269301


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6000003010000000000000-738Sequence Read ArchiveSRP033135SRP033135_T292Pseudo-temporal ordering of individual cells reveals regulators of differentiationTranscriptomeMyoblast_T72 (Skeletal muscle)HumanMuscleRNA-seqHiSeq 2000Sequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSG00000115414 FN1 fibronectin 1 156.3482
2 ENSG00000210082 MT-RNR2 mitochondrially encoded 16S RNA 89.3247
3 ENSG00000251562 MALAT1 metastasis associated lung adenocarcinoma transcript 1 (non-protein coding) 86.5240
4 ENSG00000198804 MT-CO1 mitochondrially encoded cytochrome c oxidase I 51.4840
5 ENSG00000113140 SPARC secreted protein acidic and cysteine rich 43.4950
6 ENSG00000108821 COL1A1 collagen type I alpha 1 chain 35.3841
7 ENSG00000075624 ACTB actin beta 32.8273
8 ENSG00000196205 EEF1A1P5 eukaryotic translation elongation factor 1 alpha 1 pseudogene 5 27.6232
9 ENSG00000137801 THBS1 thrombospondin 1 24.3348
10 ENSG00000164692 COL1A2 collagen type I alpha 2 chain 23.3003

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
57170 ENSG00000277063 MIR8084 microRNA 8084 -0.0767
57169 ENSG00000277062 RN7SL88P RNA, 7SL, cytoplasmic 88, pseudogene -0.0767
57167 ENSG00000277058 HNRNPCL3 heterogeneous nuclear ribonucleoprotein C-like 3 -0.0767
57166 ENSG00000277057 MIR6779 microRNA 6779 -0.0767
57165 ENSG00000277056 NA -0.0767
57163 ENSG00000277052 MIR6763 microRNA 6763 -0.0767
57162 ENSG00000277051 NA -0.0767
10 ENSG00000164692 COL1A2 collagen type I alpha 2 chain 23.3003
9 ENSG00000137801 THBS1 thrombospondin 1 24.3348
8 ENSG00000196205 EEF1A1P5 eukaryotic translation elongation factor 1 alpha 1 pseudogene 5 27.6232

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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