SHOGoiN Cell Transcriptome: GSM1269304

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1269304


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6000003010000000000000-738Sequence Read ArchiveSRP033135SRP033135_T294Pseudo-temporal ordering of individual cells reveals regulators of differentiationTranscriptomeMyoblast_T72 (Skeletal muscle)HumanMuscleRNA-seqHiSeq 2000Sequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSG00000210082 MT-RNR2 mitochondrially encoded 16S RNA 131.1322
2 ENSG00000115414 FN1 fibronectin 1 119.8433
3 ENSG00000198804 MT-CO1 mitochondrially encoded cytochrome c oxidase I 73.1634
4 ENSG00000251562 MALAT1 metastasis associated lung adenocarcinoma transcript 1 (non-protein coding) 66.6414
5 ENSG00000196205 EEF1A1P5 eukaryotic translation elongation factor 1 alpha 1 pseudogene 5 37.6589
6 ENSG00000120708 TGFBI transforming growth factor beta induced 32.7381
7 ENSG00000198712 MT-CO2 mitochondrially encoded cytochrome c oxidase II 32.2508
8 ENSG00000198886 MT-ND4 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 30.4554
9 ENSG00000113140 SPARC secreted protein acidic and cysteine rich 29.0081
10 ENSG00000108821 COL1A1 collagen type I alpha 1 chain 27.6854

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
57171 ENSG00000277049 RNA5SP530 RNA, 5S ribosomal pseudogene 530 -0.0843
57170 ENSG00000277047 NA -0.0843
57168 ENSG00000277041 NA -0.0843
57167 ENSG00000277040 NA -0.0843
57166 ENSG00000277039 NA -0.0843
57165 ENSG00000277035 NA -0.0843
57164 ENSG00000277034 NA -0.0843
57163 ENSG00000277031 RN7SL796P RNA, 7SL, cytoplasmic 796, pseudogene -0.0843
57162 ENSG00000277030 MIR8071-2 microRNA 8071-2 -0.0843
10 ENSG00000108821 COL1A1 collagen type I alpha 1 chain 27.6854

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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