SHOGoiN Cell Transcriptome: GSM1269305

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1269305


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6000003010000000000000-738Sequence Read ArchiveSRP033135SRP033135_T295Pseudo-temporal ordering of individual cells reveals regulators of differentiationTranscriptomeMyoblast_T72 (Skeletal muscle)HumanMuscleRNA-seqHiSeq 2000Sequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSG00000210082 MT-RNR2 mitochondrially encoded 16S RNA 125.5511
2 ENSG00000251562 MALAT1 metastasis associated lung adenocarcinoma transcript 1 (non-protein coding) 84.1609
3 ENSG00000198804 MT-CO1 mitochondrially encoded cytochrome c oxidase I 82.3378
4 ENSG00000137801 THBS1 thrombospondin 1 52.2563
5 ENSG00000159251 ACTC1 actin, alpha, cardiac muscle 1 42.0921
6 ENSG00000113140 SPARC secreted protein acidic and cysteine rich 38.0278
7 ENSG00000108821 COL1A1 collagen type I alpha 1 chain 34.2582
8 ENSG00000198886 MT-ND4 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 31.7977
9 ENSG00000198938 MT-CO3 mitochondrially encoded cytochrome c oxidase III 31.3111
10 ENSG00000075624 ACTB actin beta 29.3714

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
57171 ENSG00000277058 HNRNPCL3 heterogeneous nuclear ribonucleoprotein C-like 3 -0.0932
57170 ENSG00000277057 MIR6779 microRNA 6779 -0.0932
57169 ENSG00000277056 NA -0.0932
57167 ENSG00000277052 MIR6763 microRNA 6763 -0.0932
57166 ENSG00000277051 NA -0.0932
57165 ENSG00000277050 NA -0.0932
57164 ENSG00000277049 RNA5SP530 RNA, 5S ribosomal pseudogene 530 -0.0932
57162 ENSG00000277047 NA -0.0932
10 ENSG00000075624 ACTB actin beta 29.3714
9 ENSG00000198938 MT-CO3 mitochondrially encoded cytochrome c oxidase III 31.3111

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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