SHOGoiN Cell Transcriptome: GSM1269312

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1269312


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6000003010000000000000-738Sequence Read ArchiveSRP033135SRP033135_T300Pseudo-temporal ordering of individual cells reveals regulators of differentiationTranscriptomeMyoblast_T72 (Skeletal muscle)HumanMuscleRNA-seqHiSeq 2000Sequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSG00000159251 ACTC1 actin, alpha, cardiac muscle 1 103.6060
2 ENSG00000210082 MT-RNR2 mitochondrially encoded 16S RNA 100.3344
3 ENSG00000251562 MALAT1 metastasis associated lung adenocarcinoma transcript 1 (non-protein coding) 76.4441
4 ENSG00000198804 MT-CO1 mitochondrially encoded cytochrome c oxidase I 60.8061
5 ENSG00000167552 TUBA1A tubulin alpha 1a 57.2171
6 ENSG00000198712 MT-CO2 mitochondrially encoded cytochrome c oxidase II 37.1722
7 ENSG00000196205 EEF1A1P5 eukaryotic translation elongation factor 1 alpha 1 pseudogene 5 36.2933
8 ENSG00000075624 ACTB actin beta 35.6341
9 ENSG00000198727 MT-CYB mitochondrially encoded cytochrome b 31.7032
10 ENSG00000198938 MT-CO3 mitochondrially encoded cytochrome c oxidase III 27.5404

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
57170 ENSG00000277144 NA -0.0976
57169 ENSG00000277143 NA -0.0976
57168 ENSG00000277142 LINC00235 long intergenic non-protein coding RNA 235 -0.0976
57167 ENSG00000277141 NA -0.0976
57166 ENSG00000277138 MIR6509 microRNA 6509 -0.0976
57164 ENSG00000277136 NA -0.0976
57163 ENSG00000277135 NA -0.0976
57162 ENSG00000277133 NA -0.0976
10 ENSG00000198938 MT-CO3 mitochondrially encoded cytochrome c oxidase III 27.5404
9 ENSG00000198727 MT-CYB mitochondrially encoded cytochrome b 31.7032

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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