SHOGoiN Cell Transcriptome: GSM1269316

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1269316


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6000003010000000000000-738Sequence Read ArchiveSRP033135SRP033135_T303Pseudo-temporal ordering of individual cells reveals regulators of differentiationTranscriptomeMyoblast_T72 (Skeletal muscle)HumanMuscleRNA-seqHiSeq 2000Sequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSG00000210082 MT-RNR2 mitochondrially encoded 16S RNA 117.6464
2 ENSG00000198804 MT-CO1 mitochondrially encoded cytochrome c oxidase I 108.0819
3 ENSG00000115414 FN1 fibronectin 1 52.9008
4 ENSG00000113140 SPARC secreted protein acidic and cysteine rich 43.4173
5 ENSG00000251562 MALAT1 metastasis associated lung adenocarcinoma transcript 1 (non-protein coding) 42.1369
6 ENSG00000196205 EEF1A1P5 eukaryotic translation elongation factor 1 alpha 1 pseudogene 5 41.9171
7 ENSG00000108821 COL1A1 collagen type I alpha 1 chain 40.4438
8 ENSG00000198712 MT-CO2 mitochondrially encoded cytochrome c oxidase II 40.4284
9 ENSG00000198727 MT-CYB mitochondrially encoded cytochrome b 37.9139
10 ENSG00000198938 MT-CO3 mitochondrially encoded cytochrome c oxidase III 28.0408

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
57171 ENSG00000277058 HNRNPCL3 heterogeneous nuclear ribonucleoprotein C-like 3 -0.1012
57170 ENSG00000277057 MIR6779 microRNA 6779 -0.1012
57169 ENSG00000277056 NA -0.1012
57167 ENSG00000277052 MIR6763 microRNA 6763 -0.1012
57166 ENSG00000277051 NA -0.1012
57165 ENSG00000277050 NA -0.1012
57164 ENSG00000277049 RNA5SP530 RNA, 5S ribosomal pseudogene 530 -0.1012
57163 ENSG00000277047 NA -0.1012
10 ENSG00000198938 MT-CO3 mitochondrially encoded cytochrome c oxidase III 28.0408
9 ENSG00000198727 MT-CYB mitochondrially encoded cytochrome b 37.9139

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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