SHOGoiN Cell Transcriptome: GSM1269323

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1269323


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6000003010000000000000-738Sequence Read ArchiveSRP033135SRP033135_T309Pseudo-temporal ordering of individual cells reveals regulators of differentiationTranscriptomeMyoblast_T72 (Skeletal muscle)HumanMuscleRNA-seqHiSeq 2000Sequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSG00000210082 MT-RNR2 mitochondrially encoded 16S RNA 118.8334
2 ENSG00000251562 MALAT1 metastasis associated lung adenocarcinoma transcript 1 (non-protein coding) 109.2239
3 ENSG00000115414 FN1 fibronectin 1 72.5626
4 ENSG00000198804 MT-CO1 mitochondrially encoded cytochrome c oxidase I 68.7151
5 ENSG00000231991 ANXA2P2 annexin A2 pseudogene 2 43.9155
6 ENSG00000196205 EEF1A1P5 eukaryotic translation elongation factor 1 alpha 1 pseudogene 5 38.1848
7 ENSG00000198712 MT-CO2 mitochondrially encoded cytochrome c oxidase II 29.6639
8 ENSG00000245532 NEAT1 nuclear paraspeckle assembly transcript 1 (non-protein coding) 26.2856
9 ENSG00000198938 MT-CO3 mitochondrially encoded cytochrome c oxidase III 26.0854
10 ENSG00000091986 CCDC80 coiled-coil domain containing 80 24.1522

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
57170 ENSG00000277052 MIR6763 microRNA 6763 -0.0968
57169 ENSG00000277051 NA -0.0968
57168 ENSG00000277050 NA -0.0968
57167 ENSG00000277049 RNA5SP530 RNA, 5S ribosomal pseudogene 530 -0.0968
57165 ENSG00000277047 NA -0.0968
57163 ENSG00000277041 NA -0.0968
57162 ENSG00000277040 NA -0.0968
10 ENSG00000091986 CCDC80 coiled-coil domain containing 80 24.1522
9 ENSG00000198938 MT-CO3 mitochondrially encoded cytochrome c oxidase III 26.0854
8 ENSG00000245532 NEAT1 nuclear paraspeckle assembly transcript 1 (non-protein coding) 26.2856

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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