SHOGoiN Cell Transcriptome: GSM1280079-2

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1280079-2


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7020001000000000000000-715Sequence Read ArchiveSRP022764SRP022764_T34Quantitative single-cell RNA-seqTranscriptomeEmbryonic stem cellMouseEarly embryonic tissueRNA-SeqHiSeq 2000Sequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSMUSG00000098178 Gm42418 predicted gene, 42418 136.1633
2 ENSMUSG00000064339 mt-Rnr2 mitochondrially encoded 16S rRNA 47.4457
3 ENSMUSG00000060143 Gm10076 predicted gene 10076 38.9669
4 ENSMUSG00000030744 Rps3 ribosomal protein S3 31.8788
5 ENSMUSG00000023944 Hsp90ab1 heat shock protein 90 alpha (cytosolic), class B member 1 27.8682
6 ENSMUSG00000097971 Gm26917 predicted gene, 26917 27.6888
7 ENSMUSG00000064351 mt-Co1 mitochondrially encoded cytochrome c oxidase I 26.9979
8 ENSMUSG00000028234 Rps20 ribosomal protein S20 25.9212
9 ENSMUSG00000063696 Gm8730 predicted pseudogene 8730 24.6023
10 ENSMUSG00000074800 Gm4149 predicted pseudogene 4149 23.5077

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
46624 ENSMUSG00000108330 Gm44882 predicted gene 44882 -0.1073
46623 ENSMUSG00000108329 Gm44725 predicted gene 44725 -0.1073
46622 ENSMUSG00000108328 Gm45196 predicted gene 45196 -0.1073
46621 ENSMUSG00000108327 Gm44939 predicted gene 44939 -0.1073
46620 ENSMUSG00000108326 Gm17838 predicted gene, 17838 -0.1073
46619 ENSMUSG00000108325 Gm44898 predicted gene 44898 -0.1073
46618 ENSMUSG00000108324 Gm44608 predicted gene 44608 -0.1073
46617 ENSMUSG00000108323 Gm44945 predicted gene 44945 -0.1073
46616 ENSMUSG00000108322 5430431A17Rik RIKEN cDNA 5430431A17 gene -0.1073
46615 ENSMUSG00000108321 Gm44649 predicted gene 44649 -0.1073

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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