SHOGoiN Cell Transcriptome: GSM1280083-1

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1280083-1


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7020001000000000000000-715Sequence Read ArchiveSRP022764SRP022764_T41Quantitative single-cell RNA-seqTranscriptomeEmbryonic stem cellMouseEarly embryonic tissueRNA-SeqHiSeq 2000Sequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSMUSG00000064339 mt-Rnr2 mitochondrially encoded 16S rRNA 134.3417
2 ENSMUSG00000064341 mt-Nd1 mitochondrially encoded NADH dehydrogenase 1 89.7695
3 ENSMUSG00000097971 Gm26917 predicted gene, 26917 58.3799
4 ENSMUSG00000064351 mt-Co1 mitochondrially encoded cytochrome c oxidase I 54.9226
5 ENSMUSG00000100862 Gm10925 predicted gene 10925 41.3420
6 ENSMUSG00000064357 mt-Atp6 mitochondrially encoded ATP synthase 6 40.8446
7 ENSMUSG00000064337 mt-Rnr1 mitochondrially encoded 12S rRNA 39.8123
8 ENSMUSG00000101111 Gm28437 predicted gene 28437 37.5986
9 ENSMUSG00000064354 mt-Co2 mitochondrially encoded cytochrome c oxidase II 35.4471
10 ENSMUSG00000064370 mt-Cytb mitochondrially encoded cytochrome b 33.1464

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
46624 ENSMUSG00000108342 Gm29920 predicted gene, 29920 -0.0340
46623 ENSMUSG00000108341 Gm44746 predicted gene 44746 -0.0340
46622 ENSMUSG00000108340 Gm44520 predicted gene 44520 -0.0340
46621 ENSMUSG00000108339 Klk1b28-ps kallikrein 1-related peptidase b28, pseudogene -0.0340
46620 ENSMUSG00000108338 Gm44794 predicted gene 44794 -0.0340
46619 ENSMUSG00000108337 Gm4971 predicted gene 4971 -0.0340
46618 ENSMUSG00000108336 Olfr163-ps1 olfactory receptor 163, pseudogene 1 -0.0340
46617 ENSMUSG00000108335 Gm45215 predicted gene 45215 -0.0340
46616 ENSMUSG00000108334 Gm30771 predicted gene, 30771 -0.0340
46615 ENSMUSG00000108333 Gm45095 predicted gene 45095 -0.0340

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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