SHOGoiN Cell Transcriptome: GSM1280088-1

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1280088-1


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7020001000000000000000-715Sequence Read ArchiveSRP022764SRP022764_T51Quantitative single-cell RNA-seqTranscriptomeEmbryonic stem cellMouseEarly embryonic tissueRNA-SeqHiSeq 2000Sequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSMUSG00000064339 mt-Rnr2 mitochondrially encoded 16S rRNA 133.1918
2 ENSMUSG00000092341 Malat1 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) 85.0390
3 ENSMUSG00000097971 Gm26917 predicted gene, 26917 66.9131
4 ENSMUSG00000098178 Gm42418 predicted gene, 42418 44.3811
5 ENSMUSG00000064351 mt-Co1 mitochondrially encoded cytochrome c oxidase I 43.2992
6 ENSMUSG00000101111 Gm28437 predicted gene 28437 38.4228
7 ENSMUSG00000064341 mt-Nd1 mitochondrially encoded NADH dehydrogenase 1 37.6701
8 ENSMUSG00000064337 mt-Rnr1 mitochondrially encoded 12S rRNA 36.7137
9 ENSMUSG00000064358 mt-Co3 mitochondrially encoded cytochrome c oxidase III 34.0638
10 ENSMUSG00000100862 Gm10925 predicted gene 10925 33.5934

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
46624 ENSMUSG00000108339 Klk1b28-ps kallikrein 1-related peptidase b28, pseudogene -0.0556
46623 ENSMUSG00000108338 Gm44794 predicted gene 44794 -0.0556
46622 ENSMUSG00000108337 Gm4971 predicted gene 4971 -0.0556
46621 ENSMUSG00000108336 Olfr163-ps1 olfactory receptor 163, pseudogene 1 -0.0556
46620 ENSMUSG00000108335 Gm45215 predicted gene 45215 -0.0556
46619 ENSMUSG00000108334 Gm30771 predicted gene, 30771 -0.0556
46618 ENSMUSG00000108333 Gm45095 predicted gene 45095 -0.0556
46617 ENSMUSG00000108332 D530033B14Rik RIKEN cDNA D530033B14 gene -0.0556
46616 ENSMUSG00000108331 Gm5322 predicted gene 5322 -0.0556
46615 ENSMUSG00000108330 Gm44882 predicted gene 44882 -0.0556

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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