SHOGoiN Cell Transcriptome: GSM1280089-1

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1280089-1


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7020001000000000000000-715Sequence Read ArchiveSRP022764SRP022764_T53Quantitative single-cell RNA-seqTranscriptomeEmbryonic stem cellMouseEarly embryonic tissueRNA-SeqHiSeq 2000Sequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSMUSG00000064339 mt-Rnr2 mitochondrially encoded 16S rRNA 137.3790
2 ENSMUSG00000064341 mt-Nd1 mitochondrially encoded NADH dehydrogenase 1 64.4342
3 ENSMUSG00000100862 Gm10925 predicted gene 10925 57.2185
4 ENSMUSG00000064337 mt-Rnr1 mitochondrially encoded 12S rRNA 55.1325
5 ENSMUSG00000097971 Gm26917 predicted gene, 26917 53.3871
6 ENSMUSG00000064357 mt-Atp6 mitochondrially encoded ATP synthase 6 53.3765
7 ENSMUSG00000064351 mt-Co1 mitochondrially encoded cytochrome c oxidase I 49.4280
8 ENSMUSG00000101111 Gm28437 predicted gene 28437 41.4035
9 ENSMUSG00000064370 mt-Cytb mitochondrially encoded cytochrome b 40.6798
10 ENSMUSG00000064358 mt-Co3 mitochondrially encoded cytochrome c oxidase III 34.7731

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
46624 ENSMUSG00000108350 Gm44950 predicted gene 44950 -0.0285
46623 ENSMUSG00000108349 Gm18599 predicted gene, 18599 -0.0285
46622 ENSMUSG00000108348 Gm42372 predicted gene, 42372 -0.0285
46621 ENSMUSG00000108347 Gm19187 predicted gene, 19187 -0.0285
46620 ENSMUSG00000108346 Gm44980 predicted gene 44980 -0.0285
46619 ENSMUSG00000108345 4933435G04Rik RIKEN cDNA 4933435G04 gene -0.0285
46618 ENSMUSG00000108344 Gm8952 predicted gene 8952 -0.0285
46617 ENSMUSG00000108343 Gm18307 predicted gene, 18307 -0.0285
46616 ENSMUSG00000108342 Gm29920 predicted gene, 29920 -0.0285
46615 ENSMUSG00000108341 Gm44746 predicted gene 44746 -0.0285

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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