SHOGoiN Cell Transcriptome: GSM1280090-2

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1280090-2


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7020001000000000000000-715Sequence Read ArchiveSRP022764SRP022764_T56Quantitative single-cell RNA-seqTranscriptomeEmbryonic stem cellMouseEarly embryonic tissueRNA-SeqHiSeq 2000Sequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSMUSG00000064339 mt-Rnr2 mitochondrially encoded 16S rRNA 205.5917
2 ENSMUSG00000064337 mt-Rnr1 mitochondrially encoded 12S rRNA 56.0932
3 ENSMUSG00000098178 Gm42418 predicted gene, 42418 19.1032
4 ENSMUSG00000064351 mt-Co1 mitochondrially encoded cytochrome c oxidase I 17.8209
5 ENSMUSG00000064367 mt-Nd5 mitochondrially encoded NADH dehydrogenase 5 13.2243
6 ENSMUSG00000023944 Hsp90ab1 heat shock protein 90 alpha (cytosolic), class B member 1 12.0012
7 ENSMUSG00000097971 Gm26917 predicted gene, 26917 8.7066
8 ENSMUSG00000021270 Hsp90aa1 heat shock protein 90, alpha (cytosolic), class A member 1 8.1147
9 ENSMUSG00000035202 Lars2 leucyl-tRNA synthetase, mitochondrial 7.6413
10 ENSMUSG00000064341 mt-Nd1 mitochondrially encoded NADH dehydrogenase 1 7.0889

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
46624 ENSMUSG00000108349 Gm18599 predicted gene, 18599 -0.0132
46623 ENSMUSG00000108348 Gm42372 predicted gene, 42372 -0.0132
46622 ENSMUSG00000108347 Gm19187 predicted gene, 19187 -0.0132
46621 ENSMUSG00000108346 Gm44980 predicted gene 44980 -0.0132
46620 ENSMUSG00000108345 4933435G04Rik RIKEN cDNA 4933435G04 gene -0.0132
46619 ENSMUSG00000108344 Gm8952 predicted gene 8952 -0.0132
46618 ENSMUSG00000108343 Gm18307 predicted gene, 18307 -0.0132
46617 ENSMUSG00000108342 Gm29920 predicted gene, 29920 -0.0132
46616 ENSMUSG00000108341 Gm44746 predicted gene 44746 -0.0132
46615 ENSMUSG00000108340 Gm44520 predicted gene 44520 -0.0132

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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