SHOGoiN Cell Transcriptome: GSM1280096-1

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1280096-1


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7020001000000000000000-715Sequence Read ArchiveSRP022764SRP022764_T67Quantitative single-cell RNA-seqTranscriptomeEmbryonic stem cellMouseEarly embryonic tissueRNA-SeqHiSeq 2000Sequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSMUSG00000098178 Gm42418 predicted gene, 42418 148.7242
2 ENSMUSG00000092341 Malat1 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) 59.9371
3 ENSMUSG00000064339 mt-Rnr2 mitochondrially encoded 16S rRNA 56.6703
4 ENSMUSG00000064341 mt-Nd1 mitochondrially encoded NADH dehydrogenase 1 30.7638
5 ENSMUSG00000064351 mt-Co1 mitochondrially encoded cytochrome c oxidase I 24.1121
6 ENSMUSG00000064370 mt-Cytb mitochondrially encoded cytochrome b 23.3485
7 ENSMUSG00000026234 Ncl nucleolin 20.6012
8 ENSMUSG00000023944 Hsp90ab1 heat shock protein 90 alpha (cytosolic), class B member 1 20.2234
9 ENSMUSG00000064337 mt-Rnr1 mitochondrially encoded 12S rRNA 19.6172
10 ENSMUSG00000005892 Trh thyrotropin releasing hormone 18.9481

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
46624 ENSMUSG00000108326 Gm17838 predicted gene, 17838 -0.1255
46623 ENSMUSG00000108325 Gm44898 predicted gene 44898 -0.1255
46622 ENSMUSG00000108324 Gm44608 predicted gene 44608 -0.1255
46621 ENSMUSG00000108323 Gm44945 predicted gene 44945 -0.1255
46620 ENSMUSG00000108322 5430431A17Rik RIKEN cDNA 5430431A17 gene -0.1255
46619 ENSMUSG00000108321 Gm44649 predicted gene 44649 -0.1255
46618 ENSMUSG00000108320 Gm44877 predicted gene 44877 -0.1255
46617 ENSMUSG00000108319 Gm44552 predicted gene 44552 -0.1255
46616 ENSMUSG00000108318 Gm45170 predicted gene 45170 -0.1255
46615 ENSMUSG00000108317 Gm44663 predicted gene 44663 -0.1255

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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