SHOGoiN Cell Transcriptome: GSM1280122-2

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1280122-2


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7020001000000000000000-715Sequence Read ArchiveSRP022764SRP022764_T120Quantitative single-cell RNA-seqTranscriptomeEmbryonic stem cellMouseEarly embryonic tissueRNA-SeqHiSeq 2000Sequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSMUSG00000098178 Gm42418 predicted gene, 42418 149.5978
2 ENSMUSG00000092341 Malat1 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) 92.1808
3 ENSMUSG00000064339 mt-Rnr2 mitochondrially encoded 16S rRNA 34.9220
4 ENSMUSG00000060143 Gm10076 predicted gene 10076 26.3580
5 ENSMUSG00000030744 Rps3 ribosomal protein S3 20.3632
6 ENSMUSG00000063696 Gm8730 predicted pseudogene 8730 19.2014
7 ENSMUSG00000037563 Rps16 ribosomal protein S16 18.7977
8 ENSMUSG00000029580 Actb actin, beta 18.4268
9 ENSMUSG00000060461 Dppa5a developmental pluripotency associated 5A 17.9522
10 ENSMUSG00000028691 Prdx1 peroxiredoxin 1 17.1722

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
46624 ENSMUSG00000108326 Gm17838 predicted gene, 17838 -0.0922
46623 ENSMUSG00000108325 Gm44898 predicted gene 44898 -0.0922
46622 ENSMUSG00000108324 Gm44608 predicted gene 44608 -0.0922
46621 ENSMUSG00000108323 Gm44945 predicted gene 44945 -0.0922
46620 ENSMUSG00000108322 5430431A17Rik RIKEN cDNA 5430431A17 gene -0.0922
46619 ENSMUSG00000108321 Gm44649 predicted gene 44649 -0.0922
46618 ENSMUSG00000108320 Gm44877 predicted gene 44877 -0.0922
46617 ENSMUSG00000108319 Gm44552 predicted gene 44552 -0.0922
46616 ENSMUSG00000108318 Gm45170 predicted gene 45170 -0.0922
46615 ENSMUSG00000108317 Gm44663 predicted gene 44663 -0.0922

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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