SHOGoiN Cell Transcriptome: GSM1280125-2

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1280125-2


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7020001000000000000000-715Sequence Read ArchiveSRP022764SRP022764_T126Quantitative single-cell RNA-seqTranscriptomeEmbryonic stem cellMouseEarly embryonic tissueRNA-SeqHiSeq 2000Sequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSMUSG00000064339 mt-Rnr2 mitochondrially encoded 16S rRNA 158.6846
2 ENSMUSG00000064337 mt-Rnr1 mitochondrially encoded 12S rRNA 58.2489
3 ENSMUSG00000064351 mt-Co1 mitochondrially encoded cytochrome c oxidase I 52.0230
4 ENSMUSG00000064341 mt-Nd1 mitochondrially encoded NADH dehydrogenase 1 50.3177
5 ENSMUSG00000101111 Gm28437 predicted gene 28437 46.6633
6 ENSMUSG00000100862 Gm10925 predicted gene 10925 43.7038
7 ENSMUSG00000064357 mt-Atp6 mitochondrially encoded ATP synthase 6 42.9097
8 ENSMUSG00000064358 mt-Co3 mitochondrially encoded cytochrome c oxidase III 39.7697
9 ENSMUSG00000064370 mt-Cytb mitochondrially encoded cytochrome b 35.5018
10 ENSMUSG00000064354 mt-Co2 mitochondrially encoded cytochrome c oxidase II 30.9271

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
46624 ENSMUSG00000108341 Gm44746 predicted gene 44746 -0.0219
46623 ENSMUSG00000108340 Gm44520 predicted gene 44520 -0.0219
46622 ENSMUSG00000108339 Klk1b28-ps kallikrein 1-related peptidase b28, pseudogene -0.0219
46621 ENSMUSG00000108338 Gm44794 predicted gene 44794 -0.0219
46620 ENSMUSG00000108337 Gm4971 predicted gene 4971 -0.0219
46619 ENSMUSG00000108336 Olfr163-ps1 olfactory receptor 163, pseudogene 1 -0.0219
46618 ENSMUSG00000108335 Gm45215 predicted gene 45215 -0.0219
46617 ENSMUSG00000108333 Gm45095 predicted gene 45095 -0.0219
46616 ENSMUSG00000108332 D530033B14Rik RIKEN cDNA D530033B14 gene -0.0219
46615 ENSMUSG00000108331 Gm5322 predicted gene 5322 -0.0219

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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