SHOGoiN Cell Transcriptome: GSM1280154-2

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1280154-2


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7020001000000000000000-715Sequence Read ArchiveSRP022764SRP022764_T184Quantitative single-cell RNA-seqTranscriptomeEmbryonic stem cellMouseEarly embryonic tissueRNA-SeqHiSeq 2000Sequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSMUSG00000064339 mt-Rnr2 mitochondrially encoded 16S rRNA 131.5277
2 ENSMUSG00000064351 mt-Co1 mitochondrially encoded cytochrome c oxidase I 65.1204
3 ENSMUSG00000098178 Gm42418 predicted gene, 42418 54.6681
4 ENSMUSG00000064337 mt-Rnr1 mitochondrially encoded 12S rRNA 53.8037
5 ENSMUSG00000064370 mt-Cytb mitochondrially encoded cytochrome b 52.3105
6 ENSMUSG00000101939 Gm28438 predicted gene 28438 47.3594
7 ENSMUSG00000064341 mt-Nd1 mitochondrially encoded NADH dehydrogenase 1 45.5519
8 ENSMUSG00000100862 Gm10925 predicted gene 10925 45.3947
9 ENSMUSG00000064357 mt-Atp6 mitochondrially encoded ATP synthase 6 44.5302
10 ENSMUSG00000064354 mt-Co2 mitochondrially encoded cytochrome c oxidase II 39.9721

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
46624 ENSMUSG00000108352 Usf2-ps1 upstream transcription factor 2, pseudogene 1 -0.0294
46623 ENSMUSG00000108351 Gm36736 predicted gene, 36736 -0.0294
46622 ENSMUSG00000108350 Gm44950 predicted gene 44950 -0.0294
46621 ENSMUSG00000108349 Gm18599 predicted gene, 18599 -0.0294
46620 ENSMUSG00000108348 Gm42372 predicted gene, 42372 -0.0294
46619 ENSMUSG00000108347 Gm19187 predicted gene, 19187 -0.0294
46618 ENSMUSG00000108346 Gm44980 predicted gene 44980 -0.0294
46617 ENSMUSG00000108345 4933435G04Rik RIKEN cDNA 4933435G04 gene -0.0294
46616 ENSMUSG00000108344 Gm8952 predicted gene 8952 -0.0294
46615 ENSMUSG00000108343 Gm18307 predicted gene, 18307 -0.0294

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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