SHOGoiN Cell Transcriptome: GSM1280171

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1280171


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7020001000000000000000-715Sequence Read ArchiveSRP022764SRP022764_T205Quantitative single-cell RNA-seqTranscriptomeEmbryonic stem cellMouseEarly embryonic tissueRNA-SeqHiSeq 2000Sequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSMUSG00000098178 Gm42418 predicted gene, 42418 96.0378
2 ENSMUSG00000064339 mt-Rnr2 mitochondrially encoded 16S rRNA 86.9634
3 ENSMUSG00000028691 Prdx1 peroxiredoxin 1 67.8179
4 ENSMUSG00000023944 Hsp90ab1 heat shock protein 90 alpha (cytosolic), class B member 1 42.9843
5 ENSMUSG00000064351 mt-Co1 mitochondrially encoded cytochrome c oxidase I 42.4171
6 ENSMUSG00000029438 Bcl7a B cell CLL/lymphoma 7A 39.0252
7 ENSMUSG00000035202 Lars2 leucyl-tRNA synthetase, mitochondrial 34.9340
8 ENSMUSG00000030744 Rps3 ribosomal protein S3 28.0236
9 ENSMUSG00000064337 mt-Rnr1 mitochondrially encoded 12S rRNA 27.5390
10 ENSMUSG00000064341 mt-Nd1 mitochondrially encoded NADH dehydrogenase 1 26.8177

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
46624 ENSMUSG00000108324 Gm44608 predicted gene 44608 -0.0807
46623 ENSMUSG00000108323 Gm44945 predicted gene 44945 -0.0807
46622 ENSMUSG00000108322 5430431A17Rik RIKEN cDNA 5430431A17 gene -0.0807
46621 ENSMUSG00000108321 Gm44649 predicted gene 44649 -0.0807
46620 ENSMUSG00000108320 Gm44877 predicted gene 44877 -0.0807
46619 ENSMUSG00000108319 Gm44552 predicted gene 44552 -0.0807
46618 ENSMUSG00000108318 Gm45170 predicted gene 45170 -0.0807
46617 ENSMUSG00000108317 Gm44663 predicted gene 44663 -0.0807
46616 ENSMUSG00000108316 Gm44589 predicted gene 44589 -0.0807
46615 ENSMUSG00000108315 Gm44601 predicted gene 44601 -0.0807

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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