SHOGoiN Cell Transcriptome: GSM1280189

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1280189


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7020001000000000000000-715Sequence Read ArchiveSRP022764SRP022764_T223Quantitative single-cell RNA-seqTranscriptomeEmbryonic stem cellMouseEarly embryonic tissueRNA-SeqHiSeq 2000Sequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSMUSG00000064339 mt-Rnr2 mitochondrially encoded 16S rRNA 80.0689
2 ENSMUSG00000098178 Gm42418 predicted gene, 42418 64.5525
3 ENSMUSG00000060143 Gm10076 predicted gene 10076 45.1805
4 ENSMUSG00000057113 Npm1 nucleophosmin 1 38.6036
5 ENSMUSG00000064341 mt-Nd1 mitochondrially encoded NADH dehydrogenase 1 37.2817
6 ENSMUSG00000064370 mt-Cytb mitochondrially encoded cytochrome b 32.0880
7 ENSMUSG00000063696 Gm8730 predicted pseudogene 8730 31.5580
8 ENSMUSG00000064351 mt-Co1 mitochondrially encoded cytochrome c oxidase I 29.6480
9 ENSMUSG00000023944 Hsp90ab1 heat shock protein 90 alpha (cytosolic), class B member 1 29.2472
10 ENSMUSG00000074129 Rpl13a ribosomal protein L13A 27.9512

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
46624 ENSMUSG00000108326 Gm17838 predicted gene, 17838 -0.1146
46623 ENSMUSG00000108325 Gm44898 predicted gene 44898 -0.1146
46622 ENSMUSG00000108324 Gm44608 predicted gene 44608 -0.1146
46621 ENSMUSG00000108323 Gm44945 predicted gene 44945 -0.1146
46620 ENSMUSG00000108322 5430431A17Rik RIKEN cDNA 5430431A17 gene -0.1146
46619 ENSMUSG00000108321 Gm44649 predicted gene 44649 -0.1146
46618 ENSMUSG00000108320 Gm44877 predicted gene 44877 -0.1146
46617 ENSMUSG00000108319 Gm44552 predicted gene 44552 -0.1146
46616 ENSMUSG00000108318 Gm45170 predicted gene 45170 -0.1146
46615 ENSMUSG00000108317 Gm44663 predicted gene 44663 -0.1146

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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