SHOGoiN Cell Transcriptome: GSM1280223

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1280223


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7020001000000000000000-715Sequence Read ArchiveSRP022764SRP022764_T257Quantitative single-cell RNA-seqTranscriptomeEmbryonic stem cellMouseEarly embryonic tissueRNA-SeqHiSeq 2000Sequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSMUSG00000064339 mt-Rnr2 mitochondrially encoded 16S rRNA 93.3849
2 ENSMUSG00000098178 Gm42418 predicted gene, 42418 81.7568
3 ENSMUSG00000092341 Malat1 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) 53.5275
4 ENSMUSG00000064341 mt-Nd1 mitochondrially encoded NADH dehydrogenase 1 41.4666
5 ENSMUSG00000060143 Gm10076 predicted gene 10076 40.4062
6 ENSMUSG00000064370 mt-Cytb mitochondrially encoded cytochrome b 37.4930
7 ENSMUSG00000095288 Gm7618 predicted pseudogene 7618 28.4733
8 ENSMUSG00000064337 mt-Rnr1 mitochondrially encoded 12S rRNA 26.1513
9 ENSMUSG00000064351 mt-Co1 mitochondrially encoded cytochrome c oxidase I 25.6272
10 ENSMUSG00000074800 Gm4149 predicted pseudogene 4149 23.4332

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
46624 ENSMUSG00000108329 Gm44725 predicted gene 44725 -0.1156
46623 ENSMUSG00000108328 Gm45196 predicted gene 45196 -0.1156
46622 ENSMUSG00000108327 Gm44939 predicted gene 44939 -0.1156
46621 ENSMUSG00000108326 Gm17838 predicted gene, 17838 -0.1156
46620 ENSMUSG00000108325 Gm44898 predicted gene 44898 -0.1156
46619 ENSMUSG00000108324 Gm44608 predicted gene 44608 -0.1156
46618 ENSMUSG00000108323 Gm44945 predicted gene 44945 -0.1156
46617 ENSMUSG00000108322 5430431A17Rik RIKEN cDNA 5430431A17 gene -0.1156
46616 ENSMUSG00000108321 Gm44649 predicted gene 44649 -0.1156
46615 ENSMUSG00000108320 Gm44877 predicted gene 44877 -0.1156

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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