SHOGoiN Cell Transcriptome: GSM1280227

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1280227


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7020001000000000000000-715Sequence Read ArchiveSRP022764SRP022764_T261Quantitative single-cell RNA-seqTranscriptomeEmbryonic stem cellMouseEarly embryonic tissueRNA-SeqHiSeq 2000Sequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSMUSG00000064339 mt-Rnr2 mitochondrially encoded 16S rRNA 108.4011
2 ENSMUSG00000064351 mt-Co1 mitochondrially encoded cytochrome c oxidase I 64.3283
3 ENSMUSG00000098178 Gm42418 predicted gene, 42418 56.5050
4 ENSMUSG00000064341 mt-Nd1 mitochondrially encoded NADH dehydrogenase 1 48.5354
5 ENSMUSG00000064370 mt-Cytb mitochondrially encoded cytochrome b 46.8220
6 ENSMUSG00000060143 Gm10076 predicted gene 10076 42.3508
7 ENSMUSG00000064337 mt-Rnr1 mitochondrially encoded 12S rRNA 39.5871
8 ENSMUSG00000092341 Malat1 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) 28.6987
9 ENSMUSG00000100862 Gm10925 predicted gene 10925 28.6184
10 ENSMUSG00000064357 mt-Atp6 mitochondrially encoded ATP synthase 6 26.4746

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
46624 ENSMUSG00000108322 5430431A17Rik RIKEN cDNA 5430431A17 gene -0.0977
46623 ENSMUSG00000108321 Gm44649 predicted gene 44649 -0.0977
46622 ENSMUSG00000108320 Gm44877 predicted gene 44877 -0.0977
46621 ENSMUSG00000108319 Gm44552 predicted gene 44552 -0.0977
46620 ENSMUSG00000108318 Gm45170 predicted gene 45170 -0.0977
46619 ENSMUSG00000108317 Gm44663 predicted gene 44663 -0.0977
46618 ENSMUSG00000108316 Gm44589 predicted gene 44589 -0.0977
46617 ENSMUSG00000108315 Gm44601 predicted gene 44601 -0.0977
46616 ENSMUSG00000108314 Prkcz2 protein kinase C, zeta 2 -0.0977
46615 ENSMUSG00000108313 Gm45052 predicted gene 45052 -0.0977

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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