SHOGoiN Cell Transcriptome: GSM1624226

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1624226


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7020007000000000000000-795Sequence Read ArchiveSRP055810SRP055810_T5Single-Cell RNA-seq Defines the Three Cell Lineages of the Human BlastocystTranscriptomeTrophectodermHumanEarly embryonic tissueRNA-SeqHiSeq 2000Sequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSG00000075624 ACTB actin beta 115.1845
2 ENSG00000198804 MT-CO1 mitochondrially encoded cytochrome c oxidase I 106.1581
3 ENSG00000198712 MT-CO2 mitochondrially encoded cytochrome c oxidase II 70.7010
4 ENSG00000111640 GAPDH glyceraldehyde-3-phosphate dehydrogenase 57.0990
5 ENSG00000198727 MT-CYB mitochondrially encoded cytochrome b 43.3914
6 ENSG00000181163 NPM1 nucleophosmin 1 42.4812
7 ENSG00000198938 MT-CO3 mitochondrially encoded cytochrome c oxidase III 38.1655
8 ENSG00000198886 MT-ND4 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 34.7805
9 ENSG00000170421 KRT8 keratin 8 34.2686
10 ENSG00000111057 KRT18 keratin 18 32.7213

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
58735 ENSG00000285994 novel transcript, sense intronic to CAMK1D -0.0818
58734 ENSG00000285993 novel transcript, antisense to RNF165 -0.0818
58733 ENSG00000285992 novel transcript -0.0818
58732 ENSG00000285991 novel transcript -0.0818
58731 ENSG00000285990 neurobeachin (NBEA) pseudogene -0.0818
58730 ENSG00000285989 TEC -0.0818
58729 ENSG00000285988 novel transcript, LINP1-LINC00707 readthrough -0.0818
58728 ENSG00000285987 NA -0.0818
58727 ENSG00000285986 complement factor H related 3 (CFHR3) pseudogene -0.0818
58726 ENSG00000285985 NA -0.0818

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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