SHOGoiN Cell Transcriptome: GSM1677489

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1677489


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7000000000000000000000-766Sequence Read ArchiveSRP050499SRP050499_T17The Transcriptome and DNA Methylome Landscapes of Human Primordial Germ CellsTranscriptomePrimordial germ cellHumanEarly embryonic tissueRNA-seqHiSeq 2500Sequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSG00000156508 EEF1A1 eukaryotic translation elongation factor 1 alpha 1 150.8866
2 ENSG00000198804 MT-CO1 mitochondrially encoded cytochrome c oxidase I 109.4410
3 ENSG00000198886 MT-ND4 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 74.6409
4 ENSG00000174444 RPL4 ribosomal protein L4 41.7395
5 ENSG00000133112 TPT1 tumor protein, translationally-controlled 1 35.1157
6 ENSG00000184009 ACTG1 actin gamma 1 30.0248
7 ENSG00000198786 MT-ND5 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 5 25.5828
8 ENSG00000100316 RPL3 ribosomal protein L3 23.6318
9 ENSG00000080824 HSP90AA1 heat shock protein 90 alpha family class A member 1 21.7157
10 ENSG00000089157 RPLP0 ribosomal protein lateral stalk subunit P0 20.5050

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
58735 ENSG00000285994 novel transcript, sense intronic to CAMK1D -0.0850
58734 ENSG00000285993 novel transcript, antisense to RNF165 -0.0850
58733 ENSG00000285992 novel transcript -0.0850
58732 ENSG00000285991 novel transcript -0.0850
58731 ENSG00000285990 neurobeachin (NBEA) pseudogene -0.0850
58730 ENSG00000285989 TEC -0.0850
58729 ENSG00000285988 novel transcript, LINP1-LINC00707 readthrough -0.0850
58728 ENSG00000285987 NA -0.0850
58727 ENSG00000285986 complement factor H related 3 (CFHR3) pseudogene -0.0850
58726 ENSG00000285985 NA -0.0850

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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