SHOGoiN Cell Transcriptome: GSM1677490

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1677490


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7000000000000000000000-766Sequence Read ArchiveSRP050499SRP050499_T18The Transcriptome and DNA Methylome Landscapes of Human Primordial Germ CellsTranscriptomePrimordial germ cellHumanEarly embryonic tissueRNA-seqHiSeq 2500Sequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSG00000196205 EEF1A1P5 eukaryotic translation elongation factor 1 alpha 1 pseudogene 5 129.9883
2 ENSG00000198804 MT-CO1 mitochondrially encoded cytochrome c oxidase I 90.5776
3 ENSG00000156508 EEF1A1 eukaryotic translation elongation factor 1 alpha 1 59.3257
4 ENSG00000198886 MT-ND4 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 54.7746
5 ENSG00000233476 EEF1A1P6 eukaryotic translation elongation factor 1 alpha 1 pseudogene 6 51.9892
6 ENSG00000229638 RPL4P4 ribosomal protein L4 pseudogene 4 46.2143
7 ENSG00000184009 ACTG1 actin gamma 1 39.9677
8 ENSG00000283041 NA 38.2531
9 ENSG00000213553 RPLP0P6 ribosomal protein lateral stalk subunit P0 pseudogene 6 33.7785
10 ENSG00000198786 MT-ND5 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 5 31.4074

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
57171 ENSG00000277084 RNU2-4P RNA, U2 small nuclear 4, pseudogene -0.1122
57170 ENSG00000277083 PRSS3P3 PRSS3 pseudogene 3 -0.1122
57168 ENSG00000277081 NA -0.1122
57167 ENSG00000277077 NA -0.1122
57166 ENSG00000277075 HIST1H2AE histone cluster 1 H2A family member e -0.1122
57164 ENSG00000277073 MIR6131 microRNA 6131 -0.1122
57163 ENSG00000277072 STAG3L2 stromal antigen 3-like 2 (pseudogene) -0.1122
57162 ENSG00000277067 uncharacterized LOC102724843 -0.1122
10 ENSG00000198786 MT-ND5 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 5 31.4074
9 ENSG00000213553 RPLP0P6 ribosomal protein lateral stalk subunit P0 pseudogene 6 33.7785

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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