SHOGoiN Cell Transcriptome: GSM1677518

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1677518


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7000000000000000000000-766Sequence Read ArchiveSRP050499SRP050499_T46The Transcriptome and DNA Methylome Landscapes of Human Primordial Germ CellsTranscriptomePrimordial germ cellHumanEarly embryonic tissueRNA-seqHiSeq 2500Sequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSG00000198804 MT-CO1 mitochondrially encoded cytochrome c oxidase I 180.6398
2 ENSG00000198886 MT-ND4 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 72.0863
3 ENSG00000196205 EEF1A1P5 eukaryotic translation elongation factor 1 alpha 1 pseudogene 5 62.6650
4 ENSG00000184009 ACTG1 actin gamma 1 38.7336
5 ENSG00000198888 MT-ND1 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 1 36.2064
6 ENSG00000198727 MT-CYB mitochondrially encoded cytochrome b 31.0287
7 ENSG00000198899 MT-ATP6 mitochondrially encoded ATP synthase membrane subunit 6 31.0085
8 ENSG00000156508 EEF1A1 eukaryotic translation elongation factor 1 alpha 1 29.5447
9 ENSG00000198763 MT-ND2 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 2 27.5655
10 ENSG00000213553 RPLP0P6 ribosomal protein lateral stalk subunit P0 pseudogene 6 26.2392

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
57171 ENSG00000277058 HNRNPCL3 heterogeneous nuclear ribonucleoprotein C-like 3 -0.0880
57170 ENSG00000277057 MIR6779 microRNA 6779 -0.0880
57169 ENSG00000277056 NA -0.0880
57167 ENSG00000277052 MIR6763 microRNA 6763 -0.0880
57166 ENSG00000277051 NA -0.0880
57165 ENSG00000277050 NA -0.0880
57164 ENSG00000277049 RNA5SP530 RNA, 5S ribosomal pseudogene 530 -0.0880
57163 ENSG00000277047 NA -0.0880
10 ENSG00000213553 RPLP0P6 ribosomal protein lateral stalk subunit P0 pseudogene 6 26.2392
9 ENSG00000198763 MT-ND2 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 2 27.5655

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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