SHOGoiN Cell Transcriptome: GSM1677537

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1677537


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7000000000000000000000-766Sequence Read ArchiveSRP050499SRP050499_T65The Transcriptome and DNA Methylome Landscapes of Human Primordial Germ CellsTranscriptomePrimordial germ cellHumanEarly embryonic tissueRNA-seqHiSeq 2500Sequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSG00000198804 MT-CO1 mitochondrially encoded cytochrome c oxidase I 127.7304
2 ENSG00000196205 EEF1A1P5 eukaryotic translation elongation factor 1 alpha 1 pseudogene 5 114.4360
3 ENSG00000156508 EEF1A1 eukaryotic translation elongation factor 1 alpha 1 51.8866
4 ENSG00000198886 MT-ND4 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 46.8653
5 ENSG00000233476 EEF1A1P6 eukaryotic translation elongation factor 1 alpha 1 pseudogene 6 46.0799
6 ENSG00000213553 RPLP0P6 ribosomal protein lateral stalk subunit P0 pseudogene 6 36.8846
7 ENSG00000229638 RPL4P4 ribosomal protein L4 pseudogene 4 36.3551
8 ENSG00000184009 ACTG1 actin gamma 1 25.3110
9 ENSG00000080824 HSP90AA1 heat shock protein 90 alpha family class A member 1 24.6668
10 ENSG00000198888 MT-ND1 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 1 23.9255

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
57171 ENSG00000277084 RNU2-4P RNA, U2 small nuclear 4, pseudogene -0.1174
57170 ENSG00000277083 PRSS3P3 PRSS3 pseudogene 3 -0.1174
57168 ENSG00000277081 NA -0.1174
57167 ENSG00000277077 NA -0.1174
57166 ENSG00000277075 HIST1H2AE histone cluster 1 H2A family member e -0.1174
57164 ENSG00000277073 MIR6131 microRNA 6131 -0.1174
57163 ENSG00000277072 STAG3L2 stromal antigen 3-like 2 (pseudogene) -0.1174
57162 ENSG00000277066 NA -0.1174
10 ENSG00000198888 MT-ND1 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 1 23.9255
9 ENSG00000080824 HSP90AA1 heat shock protein 90 alpha family class A member 1 24.6668

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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