SHOGoiN Cell Transcriptome: GSM1677538

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1677538


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7000000000000000000000-766Sequence Read ArchiveSRP050499SRP050499_T66The Transcriptome and DNA Methylome Landscapes of Human Primordial Germ CellsTranscriptomePrimordial germ cellHumanEarly embryonic tissueRNA-seqHiSeq 2500Sequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSG00000198804 MT-CO1 mitochondrially encoded cytochrome c oxidase I 78.4744
2 ENSG00000196205 EEF1A1P5 eukaryotic translation elongation factor 1 alpha 1 pseudogene 5 73.8966
3 ENSG00000213553 RPLP0P6 ribosomal protein lateral stalk subunit P0 pseudogene 6 53.7729
4 ENSG00000080824 HSP90AA1 heat shock protein 90 alpha family class A member 1 46.6797
5 ENSG00000210082 MT-RNR2 mitochondrially encoded 16S RNA 44.0923
6 ENSG00000198886 MT-ND4 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 42.8737
7 ENSG00000156508 EEF1A1 eukaryotic translation elongation factor 1 alpha 1 40.9800
8 ENSG00000225178 RPSAP58 ribosomal protein SA pseudogene 58 37.5646
9 ENSG00000234782 TPT1P9 tumor protein, translationally-controlled 1 pseudogene 9 33.2274
10 ENSG00000198888 MT-ND1 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 1 32.5368

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
57171 ENSG00000277027 RMRP RNA component of mitochondrial RNA processing endoribonuclease -0.1360
57169 ENSG00000277024 NA -0.1360
57167 ENSG00000277022 NA -0.1360
57165 ENSG00000277020 NA -0.1360
57164 ENSG00000277017 NA -0.1360
57163 ENSG00000277014 MIR3179-4 microRNA 3179-4 -0.1360
57162 ENSG00000277013 NA -0.1360
10 ENSG00000198888 MT-ND1 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 1 32.5368
9 ENSG00000234782 TPT1P9 tumor protein, translationally-controlled 1 pseudogene 9 33.2274
8 ENSG00000225178 RPSAP58 ribosomal protein SA pseudogene 58 37.5646

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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