SHOGoiN Cell Transcriptome: GSM1677540

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1677540


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7000000000000000000000-766Sequence Read ArchiveSRP050499SRP050499_T68The Transcriptome and DNA Methylome Landscapes of Human Primordial Germ CellsTranscriptomePrimordial germ cellHumanEarly embryonic tissueRNA-seqHiSeq 2500Sequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSG00000196205 EEF1A1P5 eukaryotic translation elongation factor 1 alpha 1 pseudogene 5 100.5237
2 ENSG00000198804 MT-CO1 mitochondrially encoded cytochrome c oxidase I 71.6790
3 ENSG00000184009 ACTG1 actin gamma 1 59.6834
4 ENSG00000156508 EEF1A1 eukaryotic translation elongation factor 1 alpha 1 50.2669
5 ENSG00000198886 MT-ND4 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 49.6398
6 ENSG00000233476 EEF1A1P6 eukaryotic translation elongation factor 1 alpha 1 pseudogene 6 42.1257
7 ENSG00000234782 TPT1P9 tumor protein, translationally-controlled 1 pseudogene 9 41.4987
8 ENSG00000198888 MT-ND1 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 1 40.7937
9 ENSG00000213553 RPLP0P6 ribosomal protein lateral stalk subunit P0 pseudogene 6 35.7418
10 ENSG00000080824 HSP90AA1 heat shock protein 90 alpha family class A member 1 30.8918

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
57170 ENSG00000277096 NA -0.1211
57169 ENSG00000277095 NA -0.1211
57167 ENSG00000277089 NA -0.1211
57166 ENSG00000277087 NA -0.1211
57165 ENSG00000277084 RNU2-4P RNA, U2 small nuclear 4, pseudogene -0.1211
57164 ENSG00000277083 PRSS3P3 PRSS3 pseudogene 3 -0.1211
57162 ENSG00000277081 NA -0.1211
10 ENSG00000080824 HSP90AA1 heat shock protein 90 alpha family class A member 1 30.8918
9 ENSG00000213553 RPLP0P6 ribosomal protein lateral stalk subunit P0 pseudogene 6 35.7418
8 ENSG00000198888 MT-ND1 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 1 40.7937

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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