SHOGoiN Cell Transcriptome: GSM1677548

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1677548


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7000000000000000000000-766Sequence Read ArchiveSRP050499SRP050499_T76The Transcriptome and DNA Methylome Landscapes of Human Primordial Germ CellsTranscriptomePrimordial germ cellHumanEarly embryonic tissueRNA-seqHiSeq 2500Sequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSG00000196205 EEF1A1P5 eukaryotic translation elongation factor 1 alpha 1 pseudogene 5 60.2836
2 ENSG00000198804 MT-CO1 mitochondrially encoded cytochrome c oxidase I 56.6631
3 ENSG00000198886 MT-ND4 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 53.2646
4 ENSG00000234782 TPT1P9 tumor protein, translationally-controlled 1 pseudogene 9 39.2265
5 ENSG00000198899 MT-ATP6 mitochondrially encoded ATP synthase membrane subunit 6 38.5354
6 ENSG00000198888 MT-ND1 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 1 37.6731
7 ENSG00000080824 HSP90AA1 heat shock protein 90 alpha family class A member 1 36.6840
8 ENSG00000198786 MT-ND5 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 5 31.3325
9 ENSG00000156508 EEF1A1 eukaryotic translation elongation factor 1 alpha 1 29.7727
10 ENSG00000225178 RPSAP58 ribosomal protein SA pseudogene 58 27.7374

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
57171 ENSG00000277075 HIST1H2AE histone cluster 1 H2A family member e -0.1675
57169 ENSG00000277073 MIR6131 microRNA 6131 -0.1675
57168 ENSG00000277067 uncharacterized LOC102724843 -0.1675
57167 ENSG00000277066 NA -0.1675
57165 ENSG00000277063 MIR8084 microRNA 8084 -0.1675
57164 ENSG00000277062 RN7SL88P RNA, 7SL, cytoplasmic 88, pseudogene -0.1675
57162 ENSG00000277058 HNRNPCL3 heterogeneous nuclear ribonucleoprotein C-like 3 -0.1675
10 ENSG00000225178 RPSAP58 ribosomal protein SA pseudogene 58 27.7374
9 ENSG00000156508 EEF1A1 eukaryotic translation elongation factor 1 alpha 1 29.7727
8 ENSG00000198786 MT-ND5 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 5 31.3325

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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