SHOGoiN Cell Transcriptome: GSM1677558

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1677558


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7000000000000000000000-766Sequence Read ArchiveSRP050499SRP050499_T86The Transcriptome and DNA Methylome Landscapes of Human Primordial Germ CellsTranscriptomePrimordial germ cellHumanEarly embryonic tissueRNA-seqHiSeq 2500Sequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSG00000198804 MT-CO1 mitochondrially encoded cytochrome c oxidase I 168.7075
2 ENSG00000196205 EEF1A1P5 eukaryotic translation elongation factor 1 alpha 1 pseudogene 5 70.5802
3 ENSG00000198886 MT-ND4 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 63.8395
4 ENSG00000213553 RPLP0P6 ribosomal protein lateral stalk subunit P0 pseudogene 6 45.4460
5 ENSG00000184009 ACTG1 actin gamma 1 42.5977
6 ENSG00000198899 MT-ATP6 mitochondrially encoded ATP synthase membrane subunit 6 40.8801
7 ENSG00000156508 EEF1A1 eukaryotic translation elongation factor 1 alpha 1 32.9036
8 ENSG00000233476 EEF1A1P6 eukaryotic translation elongation factor 1 alpha 1 pseudogene 6 28.3871
9 ENSG00000229638 RPL4P4 ribosomal protein L4 pseudogene 4 25.1248
10 ENSG00000198888 MT-ND1 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 1 24.7788

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
57171 ENSG00000277119 NA -0.0959
57170 ENSG00000277118 NA -0.0959
57169 ENSG00000277117 ICOS ligand -0.0959
57166 ENSG00000277112 ANKRD20A21P ankyrin repeat domain 20 family member A21, pseudogene -0.0959
57165 ENSG00000277109 NA -0.0959
57164 ENSG00000277108 SNORD49B small nucleolar RNA, C/D box 49B -0.0959
10 ENSG00000198888 MT-ND1 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 1 24.7788
9 ENSG00000229638 RPL4P4 ribosomal protein L4 pseudogene 4 25.1248
8 ENSG00000233476 EEF1A1P6 eukaryotic translation elongation factor 1 alpha 1 pseudogene 6 28.3871
7 ENSG00000156508 EEF1A1 eukaryotic translation elongation factor 1 alpha 1 32.9036

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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