SHOGoiN Cell Transcriptome: GSM1677566

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1677566


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7000000000000000000000-766Sequence Read ArchiveSRP050499SRP050499_T94The Transcriptome and DNA Methylome Landscapes of Human Primordial Germ CellsTranscriptomePrimordial germ cellHumanEarly embryonic tissueRNA-seqHiSeq 2500Sequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSG00000196205 EEF1A1P5 eukaryotic translation elongation factor 1 alpha 1 pseudogene 5 110.3112
2 ENSG00000198804 MT-CO1 mitochondrially encoded cytochrome c oxidase I 88.0298
3 ENSG00000198886 MT-ND4 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 72.1550
4 ENSG00000156508 EEF1A1 eukaryotic translation elongation factor 1 alpha 1 53.3985
5 ENSG00000213553 RPLP0P6 ribosomal protein lateral stalk subunit P0 pseudogene 6 51.4945
6 ENSG00000080824 HSP90AA1 heat shock protein 90 alpha family class A member 1 50.3282
7 ENSG00000233476 EEF1A1P6 eukaryotic translation elongation factor 1 alpha 1 pseudogene 6 46.5889
8 ENSG00000198763 MT-ND2 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 2 40.2852
9 ENSG00000198786 MT-ND5 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 5 35.4396
10 ENSG00000187837 HIST1H1C histone cluster 1 H1 family member c 33.5271

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
57170 ENSG00000277120 MIR6089 microRNA 6089 -0.1094
57169 ENSG00000277119 NA -0.1094
57168 ENSG00000277118 NA -0.1094
57167 ENSG00000277117 ICOS ligand -0.1094
57164 ENSG00000277112 ANKRD20A21P ankyrin repeat domain 20 family member A21, pseudogene -0.1094
57163 ENSG00000277109 NA -0.1094
57162 ENSG00000277108 SNORD49B small nucleolar RNA, C/D box 49B -0.1094
10 ENSG00000187837 HIST1H1C histone cluster 1 H1 family member c 33.5271
9 ENSG00000198786 MT-ND5 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 5 35.4396
8 ENSG00000198763 MT-ND2 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 2 40.2852

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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