SHOGoiN Cell Transcriptome: GSM1677572

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1677572


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7000000000000000000000-766Sequence Read ArchiveSRP050499SRP050499_T100The Transcriptome and DNA Methylome Landscapes of Human Primordial Germ CellsTranscriptomePrimordial germ cellHumanEarly embryonic tissueRNA-seqHiSeq 2500Sequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSG00000198804 MT-CO1 mitochondrially encoded cytochrome c oxidase I 143.9283
2 ENSG00000198886 MT-ND4 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 116.4986
3 ENSG00000213553 RPLP0P6 ribosomal protein lateral stalk subunit P0 pseudogene 6 44.3745
4 ENSG00000198888 MT-ND1 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 1 40.8664
5 ENSG00000196205 EEF1A1P5 eukaryotic translation elongation factor 1 alpha 1 pseudogene 5 38.4807
6 ENSG00000198763 MT-ND2 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 2 33.2025
7 ENSG00000198786 MT-ND5 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 5 32.6830
8 ENSG00000198899 MT-ATP6 mitochondrially encoded ATP synthase membrane subunit 6 27.7704
9 ENSG00000234782 TPT1P9 tumor protein, translationally-controlled 1 pseudogene 9 26.2313
10 ENSG00000198727 MT-CYB mitochondrially encoded cytochrome b 24.3522

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
57171 ENSG00000277084 RNU2-4P RNA, U2 small nuclear 4, pseudogene -0.1082
57170 ENSG00000277083 PRSS3P3 PRSS3 pseudogene 3 -0.1082
57168 ENSG00000277081 NA -0.1082
57167 ENSG00000277077 NA -0.1082
57165 ENSG00000277073 MIR6131 microRNA 6131 -0.1082
57164 ENSG00000277072 STAG3L2 stromal antigen 3-like 2 (pseudogene) -0.1082
57163 ENSG00000277067 uncharacterized LOC102724843 -0.1082
57162 ENSG00000277066 NA -0.1082
10 ENSG00000198727 MT-CYB mitochondrially encoded cytochrome b 24.3522
9 ENSG00000234782 TPT1P9 tumor protein, translationally-controlled 1 pseudogene 9 26.2313

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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