SHOGoiN Cell Transcriptome: GSM1677578

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1677578


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7000000000000000000000-766Sequence Read ArchiveSRP050499SRP050499_T106The Transcriptome and DNA Methylome Landscapes of Human Primordial Germ CellsTranscriptomePrimordial germ cellHumanEarly embryonic tissueRNA-seqHiSeq 2500Sequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSG00000198804 MT-CO1 mitochondrially encoded cytochrome c oxidase I 104.3794
2 ENSG00000196205 EEF1A1P5 eukaryotic translation elongation factor 1 alpha 1 pseudogene 5 77.5877
3 ENSG00000213553 RPLP0P6 ribosomal protein lateral stalk subunit P0 pseudogene 6 64.7991
4 ENSG00000198886 MT-ND4 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 60.2323
5 ENSG00000184009 ACTG1 actin gamma 1 53.9007
6 ENSG00000080824 HSP90AA1 heat shock protein 90 alpha family class A member 1 50.5818
7 ENSG00000156508 EEF1A1 eukaryotic translation elongation factor 1 alpha 1 38.1550
8 ENSG00000225178 RPSAP58 ribosomal protein SA pseudogene 58 37.2542
9 ENSG00000233476 EEF1A1P6 eukaryotic translation elongation factor 1 alpha 1 pseudogene 6 32.3957
10 ENSG00000229638 RPL4P4 ribosomal protein L4 pseudogene 4 30.1400

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
57171 ENSG00000277119 NA -0.1295
57170 ENSG00000277118 NA -0.1295
57169 ENSG00000277117 ICOS ligand -0.1295
57166 ENSG00000277112 ANKRD20A21P ankyrin repeat domain 20 family member A21, pseudogene -0.1295
57165 ENSG00000277109 NA -0.1295
57164 ENSG00000277108 SNORD49B small nucleolar RNA, C/D box 49B -0.1295
10 ENSG00000229638 RPL4P4 ribosomal protein L4 pseudogene 4 30.1400
9 ENSG00000233476 EEF1A1P6 eukaryotic translation elongation factor 1 alpha 1 pseudogene 6 32.3957
8 ENSG00000225178 RPSAP58 ribosomal protein SA pseudogene 58 37.2542
7 ENSG00000156508 EEF1A1 eukaryotic translation elongation factor 1 alpha 1 38.1550

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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