SHOGoiN Cell Transcriptome: GSM1677587

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1677587


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7000000000000000000000-766Sequence Read ArchiveSRP050499SRP050499_T115The Transcriptome and DNA Methylome Landscapes of Human Primordial Germ CellsTranscriptomePrimordial germ cellHumanEarly embryonic tissueRNA-seqHiSeq 2500Sequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSG00000196205 EEF1A1P5 eukaryotic translation elongation factor 1 alpha 1 pseudogene 5 106.1934
2 ENSG00000213553 RPLP0P6 ribosomal protein lateral stalk subunit P0 pseudogene 6 74.3903
3 ENSG00000198804 MT-CO1 mitochondrially encoded cytochrome c oxidase I 57.0324
4 ENSG00000225178 RPSAP58 ribosomal protein SA pseudogene 58 54.0893
5 ENSG00000156508 EEF1A1 eukaryotic translation elongation factor 1 alpha 1 50.4678
6 ENSG00000184009 ACTG1 actin gamma 1 48.6978
7 ENSG00000233476 EEF1A1P6 eukaryotic translation elongation factor 1 alpha 1 pseudogene 6 44.4540
8 ENSG00000283041 NA 42.6075
9 ENSG00000234782 TPT1P9 tumor protein, translationally-controlled 1 pseudogene 9 40.9906
10 ENSG00000229638 RPL4P4 ribosomal protein L4 pseudogene 4 39.3074

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
57171 ENSG00000277118 NA -0.1214
57170 ENSG00000277117 ICOS ligand -0.1214
57167 ENSG00000277112 ANKRD20A21P ankyrin repeat domain 20 family member A21, pseudogene -0.1214
57166 ENSG00000277109 NA -0.1214
57165 ENSG00000277108 SNORD49B small nucleolar RNA, C/D box 49B -0.1214
57162 ENSG00000277103 NA -0.1214
10 ENSG00000229638 RPL4P4 ribosomal protein L4 pseudogene 4 39.3074
9 ENSG00000234782 TPT1P9 tumor protein, translationally-controlled 1 pseudogene 9 40.9906
8 ENSG00000283041 NA 42.6075
7 ENSG00000233476 EEF1A1P6 eukaryotic translation elongation factor 1 alpha 1 pseudogene 6 44.4540

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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