SHOGoiN Cell Transcriptome: GSM1677588

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1677588


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7000000000000000000000-766Sequence Read ArchiveSRP050499SRP050499_T116The Transcriptome and DNA Methylome Landscapes of Human Primordial Germ CellsTranscriptomePrimordial germ cellHumanEarly embryonic tissueRNA-seqHiSeq 2500Sequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSG00000196205 EEF1A1P5 eukaryotic translation elongation factor 1 alpha 1 pseudogene 5 83.9703
2 ENSG00000198804 MT-CO1 mitochondrially encoded cytochrome c oxidase I 74.4837
3 ENSG00000213553 RPLP0P6 ribosomal protein lateral stalk subunit P0 pseudogene 6 67.7535
4 ENSG00000080824 HSP90AA1 heat shock protein 90 alpha family class A member 1 57.2938
5 ENSG00000225178 RPSAP58 ribosomal protein SA pseudogene 58 49.6638
6 ENSG00000184009 ACTG1 actin gamma 1 48.2266
7 ENSG00000198886 MT-ND4 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 46.0361
8 ENSG00000229638 RPL4P4 ribosomal protein L4 pseudogene 4 41.3824
9 ENSG00000156508 EEF1A1 eukaryotic translation elongation factor 1 alpha 1 40.9020
10 ENSG00000283041 NA 37.8972

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
57170 ENSG00000277057 MIR6779 microRNA 6779 -0.1388
57169 ENSG00000277056 NA -0.1388
57167 ENSG00000277052 MIR6763 microRNA 6763 -0.1388
57166 ENSG00000277051 NA -0.1388
57165 ENSG00000277050 NA -0.1388
57164 ENSG00000277049 RNA5SP530 RNA, 5S ribosomal pseudogene 530 -0.1388
57162 ENSG00000277047 NA -0.1388
10 ENSG00000283041 NA 37.8972
9 ENSG00000156508 EEF1A1 eukaryotic translation elongation factor 1 alpha 1 40.9020
8 ENSG00000229638 RPL4P4 ribosomal protein L4 pseudogene 4 41.3824

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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