SHOGoiN Cell Transcriptome: GSM1677594

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1677594


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7000000000000000000000-766Sequence Read ArchiveSRP050499SRP050499_T122The Transcriptome and DNA Methylome Landscapes of Human Primordial Germ CellsTranscriptomePrimordial germ cellHumanEarly embryonic tissueRNA-seqHiSeq 2500Sequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSG00000198804 MT-CO1 mitochondrially encoded cytochrome c oxidase I 137.0556
2 ENSG00000198886 MT-ND4 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 105.0950
3 ENSG00000213553 RPLP0P6 ribosomal protein lateral stalk subunit P0 pseudogene 6 64.1246
4 ENSG00000196205 EEF1A1P5 eukaryotic translation elongation factor 1 alpha 1 pseudogene 5 57.6144
5 ENSG00000198888 MT-ND1 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 1 52.0859
6 ENSG00000184009 ACTG1 actin gamma 1 37.5499
7 ENSG00000229638 RPL4P4 ribosomal protein L4 pseudogene 4 34.3107
8 ENSG00000225178 RPSAP58 ribosomal protein SA pseudogene 58 33.7338
9 ENSG00000198786 MT-ND5 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 5 32.5259
10 ENSG00000204628 RACK1 receptor for activated C kinase 1 30.3023

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
57171 ENSG00000277029 RNU6-1192P RNA, U6 small nuclear 1192, pseudogene -0.0771
57170 ENSG00000277027 RMRP RNA component of mitochondrial RNA processing endoribonuclease -0.0771
57168 ENSG00000277024 NA -0.0771
57166 ENSG00000277022 NA -0.0771
57164 ENSG00000277020 NA -0.0771
57163 ENSG00000277017 NA -0.0771
57162 ENSG00000277014 MIR3179-4 microRNA 3179-4 -0.0771
10 ENSG00000204628 RACK1 receptor for activated C kinase 1 30.3023
9 ENSG00000198786 MT-ND5 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 5 32.5259
8 ENSG00000225178 RPSAP58 ribosomal protein SA pseudogene 58 33.7338

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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