SHOGoiN Cell Transcriptome: GSM1677596

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1677596


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7000000000000000000000-766Sequence Read ArchiveSRP050499SRP050499_T124The Transcriptome and DNA Methylome Landscapes of Human Primordial Germ CellsTranscriptomePrimordial germ cellHumanEarly embryonic tissueRNA-seqHiSeq 2500Sequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSG00000198804 MT-CO1 mitochondrially encoded cytochrome c oxidase I 168.3042
2 ENSG00000198886 MT-ND4 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 124.6595
3 ENSG00000198899 MT-ATP6 mitochondrially encoded ATP synthase membrane subunit 6 41.3280
4 ENSG00000198763 MT-ND2 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 2 40.9058
5 ENSG00000198727 MT-CYB mitochondrially encoded cytochrome b 36.3234
6 ENSG00000198786 MT-ND5 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 5 31.7321
7 ENSG00000198888 MT-ND1 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 1 31.5299
8 ENSG00000080824 HSP90AA1 heat shock protein 90 alpha family class A member 1 24.0948
9 ENSG00000196205 EEF1A1P5 eukaryotic translation elongation factor 1 alpha 1 pseudogene 5 20.7209
10 ENSG00000213553 RPLP0P6 ribosomal protein lateral stalk subunit P0 pseudogene 6 20.0021

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
57171 ENSG00000277118 NA -0.0749
57170 ENSG00000277117 ICOS ligand -0.0749
57167 ENSG00000277112 ANKRD20A21P ankyrin repeat domain 20 family member A21, pseudogene -0.0749
57166 ENSG00000277109 NA -0.0749
57165 ENSG00000277108 SNORD49B small nucleolar RNA, C/D box 49B -0.0749
57162 ENSG00000277103 NA -0.0749
10 ENSG00000213553 RPLP0P6 ribosomal protein lateral stalk subunit P0 pseudogene 6 20.0021
9 ENSG00000196205 EEF1A1P5 eukaryotic translation elongation factor 1 alpha 1 pseudogene 5 20.7209
8 ENSG00000080824 HSP90AA1 heat shock protein 90 alpha family class A member 1 24.0948
7 ENSG00000198888 MT-ND1 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 1 31.5299

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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