SHOGoiN Cell Transcriptome: GSM1677598

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1677598


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7000000000000000000000-766Sequence Read ArchiveSRP050499SRP050499_T126The Transcriptome and DNA Methylome Landscapes of Human Primordial Germ CellsTranscriptomePrimordial germ cellHumanEarly embryonic tissueRNA-seqHiSeq 2500Sequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSG00000198804 MT-CO1 mitochondrially encoded cytochrome c oxidase I 99.5288
2 ENSG00000198886 MT-ND4 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 82.4078
3 ENSG00000080824 HSP90AA1 heat shock protein 90 alpha family class A member 1 68.1167
4 ENSG00000196205 EEF1A1P5 eukaryotic translation elongation factor 1 alpha 1 pseudogene 5 64.8846
5 ENSG00000213553 RPLP0P6 ribosomal protein lateral stalk subunit P0 pseudogene 6 42.5581
6 ENSG00000198786 MT-ND5 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 5 41.9623
7 ENSG00000184009 ACTG1 actin gamma 1 37.0546
8 ENSG00000224411 HSP90AA2P heat shock protein 90 alpha family class A member 2, pseudogene 33.7183
9 ENSG00000156508 EEF1A1 eukaryotic translation elongation factor 1 alpha 1 31.5139
10 ENSG00000198763 MT-ND2 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 2 31.1937

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
57171 ENSG00000277118 NA -0.1290
57170 ENSG00000277117 ICOS ligand -0.1290
57167 ENSG00000277112 ANKRD20A21P ankyrin repeat domain 20 family member A21, pseudogene -0.1290
57166 ENSG00000277109 NA -0.1290
57165 ENSG00000277108 SNORD49B small nucleolar RNA, C/D box 49B -0.1290
57162 ENSG00000277103 NA -0.1290
10 ENSG00000198763 MT-ND2 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 2 31.1937
9 ENSG00000156508 EEF1A1 eukaryotic translation elongation factor 1 alpha 1 31.5139
8 ENSG00000224411 HSP90AA2P heat shock protein 90 alpha family class A member 2, pseudogene 33.7183
7 ENSG00000184009 ACTG1 actin gamma 1 37.0546

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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