SHOGoiN Cell Transcriptome: GSM1713188

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1713188


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6000001010000000000000-734Sequence Read ArchiveSRP059549SRP059549_T5Single-cell RNA-seq reveals activation of unique gene groups as a consequence of stem cell-parenchymal cell fusionTranscriptomeMesenchymal Stem Cell (MSC)MouseBone marrowRNA-SeqMiSeqSequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSMUSG00000029580 Actb actin, beta 60.4734
2 ENSMUSG00000020368 Canx calnexin 57.9896
3 ENSMUSG00000029304 Spp1 secreted phosphoprotein 1 51.2033
4 ENSMUSG00000064351 mt-Co1 mitochondrially encoded cytochrome c oxidase I 50.9372
5 ENSMUSG00000064341 mt-Nd1 mitochondrially encoded NADH dehydrogenase 1 44.9494
6 ENSMUSG00000064370 mt-Cytb mitochondrially encoded cytochrome b 43.2195
7 ENSMUSG00000026276 Sept2 septin 2 39.0059
8 ENSMUSG00000064339 mt-Rnr2 mitochondrially encoded 16S rRNA 38.7841
9 ENSMUSG00000092341 Malat1 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) 38.4293
10 ENSMUSG00000022403 St13 suppression of tumorigenicity 13 38.3849

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
46624 ENSMUSG00000108315 Gm44601 predicted gene 44601 -0.1148
46623 ENSMUSG00000108314 Prkcz2 protein kinase C, zeta 2 -0.1148
46622 ENSMUSG00000108313 Gm45052 predicted gene 45052 -0.1148
46621 ENSMUSG00000108312 Gm44521 predicted gene 44521 -0.1148
46620 ENSMUSG00000108311 Gm44737 predicted gene 44737 -0.1148
46619 ENSMUSG00000108310 Gm44712 predicted gene 44712 -0.1148
46618 ENSMUSG00000108309 Gm44703 predicted gene 44703 -0.1148
46617 ENSMUSG00000108308 Gm45218 predicted gene 45218 -0.1148
46616 ENSMUSG00000108307 Ceacam-ps1 carcinoembryonic antigen-related cell adhesion molecule pseudogene 1 -0.1148
46615 ENSMUSG00000108306 Gm44640 predicted gene 44640 -0.1148

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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