SHOGoiN Cell Transcriptome: GSM1713197

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1713197


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6000001010000000000000-734Sequence Read ArchiveSRP059549SRP059549_T14Single-cell RNA-seq reveals activation of unique gene groups as a consequence of stem cell-parenchymal cell fusionTranscriptomeMesenchymal Stem Cell (MSC)MouseBone marrowRNA-SeqMiSeqSequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSMUSG00000092341 Malat1 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) 161.8330
2 ENSMUSG00000102349 Gm37376 predicted gene, 37376 112.2387
3 ENSMUSG00000029580 Actb actin, beta 29.2999
4 ENSMUSG00000064339 mt-Rnr2 mitochondrially encoded 16S rRNA 28.4545
5 ENSMUSG00000064351 mt-Co1 mitochondrially encoded cytochrome c oxidase I 24.6974
6 ENSMUSG00000064341 mt-Nd1 mitochondrially encoded NADH dehydrogenase 1 20.7054
7 ENSMUSG00000045932 Ifit2 interferon-induced protein with tetratricopeptide repeats 2 18.5451
8 ENSMUSG00000064358 mt-Co3 mitochondrially encoded cytochrome c oxidase III 15.8211
9 ENSMUSG00000101111 Gm28437 predicted gene 28437 15.8211
10 ENSMUSG00000100862 Gm10925 predicted gene 10925 13.9426

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
46624 ENSMUSG00000108340 Gm44520 predicted gene 44520 -0.0528
46623 ENSMUSG00000108339 Klk1b28-ps kallikrein 1-related peptidase b28, pseudogene -0.0528
46622 ENSMUSG00000108338 Gm44794 predicted gene 44794 -0.0528
46621 ENSMUSG00000108337 Gm4971 predicted gene 4971 -0.0528
46620 ENSMUSG00000108336 Olfr163-ps1 olfactory receptor 163, pseudogene 1 -0.0528
46619 ENSMUSG00000108335 Gm45215 predicted gene 45215 -0.0528
46618 ENSMUSG00000108334 Gm30771 predicted gene, 30771 -0.0528
46617 ENSMUSG00000108333 Gm45095 predicted gene 45095 -0.0528
46616 ENSMUSG00000108331 Gm5322 predicted gene 5322 -0.0528
46615 ENSMUSG00000108330 Gm44882 predicted gene 44882 -0.0528

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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