SHOGoiN Cell Transcriptome: GSM1822030

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1822030


Profile download
6000001010000000000000-734Sequence Read ArchiveSRP061185SRP061185_T9Single-cell RNA-seq of bone marrow-derived mesenchymal stem cells reveals unique profiles of lineage primingTranscriptomeMesenchymal stem cell (MSC)MouseBone marrowRNA-SeqMiSeqSequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSMUSG00000092341 Malat1 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) 169.1493
2 ENSMUSG00000102349 Gm37376 predicted gene, 37376 98.3862
3 ENSMUSG00000029580 Actb actin, beta 39.3383
4 ENSMUSG00000064341 mt-Nd1 mitochondrially encoded NADH dehydrogenase 1 19.2148
5 ENSMUSG00000064370 mt-Cytb mitochondrially encoded cytochrome b 17.7976
6 ENSMUSG00000064351 mt-Co1 mitochondrially encoded cytochrome c oxidase I 17.3252
7 ENSMUSG00000064339 mt-Rnr2 mitochondrially encoded 16S rRNA 17.2308
8 ENSMUSG00000100862 Gm10925 predicted gene 10925 16.5694
9 ENSMUSG00000020368 Canx calnexin 15.6247
10 ENSMUSG00000029304 Spp1 secreted phosphoprotein 1 15.5302

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
46624 ENSMUSG00000108342 Gm29920 predicted gene, 29920 -0.0585
46623 ENSMUSG00000108341 Gm44746 predicted gene 44746 -0.0585
46622 ENSMUSG00000108340 Gm44520 predicted gene 44520 -0.0585
46621 ENSMUSG00000108339 Klk1b28-ps kallikrein 1-related peptidase b28, pseudogene -0.0585
46620 ENSMUSG00000108338 Gm44794 predicted gene 44794 -0.0585
46619 ENSMUSG00000108337 Gm4971 predicted gene 4971 -0.0585
46618 ENSMUSG00000108336 Olfr163-ps1 olfactory receptor 163, pseudogene 1 -0.0585
46617 ENSMUSG00000108335 Gm45215 predicted gene 45215 -0.0585
46616 ENSMUSG00000108334 Gm30771 predicted gene, 30771 -0.0585
46615 ENSMUSG00000108333 Gm45095 predicted gene 45095 -0.0585

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

full download

Now loading...