SHOGoiN Cell Transcriptome: GSM1822037

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1822037


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6000001010000000000000-734Sequence Read ArchiveSRP061185SRP061185_T16Single-cell RNA-seq of bone marrow-derived mesenchymal stem cells reveals unique profiles of lineage primingTranscriptomeMesenchymal stem cell (MSC)MouseBone marrowRNA-SeqMiSeqSequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSMUSG00000029580 Actb actin, beta 119.2115
2 ENSMUSG00000092341 Malat1 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) 105.0733
3 ENSMUSG00000102349 Gm37376 predicted gene, 37376 80.0989
4 ENSMUSG00000017009 Sdc4 syndecan 4 51.5436
5 ENSMUSG00000029304 Spp1 secreted phosphoprotein 1 38.6611
6 ENSMUSG00000026276 Sept2 septin 2 22.6626
7 ENSMUSG00000064341 mt-Nd1 mitochondrially encoded NADH dehydrogenase 1 22.2441
8 ENSMUSG00000064351 mt-Co1 mitochondrially encoded cytochrome c oxidase I 21.4069
9 ENSMUSG00000020368 Canx calnexin 20.2442
10 ENSMUSG00000021427 Ssr1 signal sequence receptor, alpha 18.0119

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
46624 ENSMUSG00000108326 Gm17838 predicted gene, 17838 -0.0794
46623 ENSMUSG00000108325 Gm44898 predicted gene 44898 -0.0794
46622 ENSMUSG00000108324 Gm44608 predicted gene 44608 -0.0794
46621 ENSMUSG00000108323 Gm44945 predicted gene 44945 -0.0794
46620 ENSMUSG00000108322 5430431A17Rik RIKEN cDNA 5430431A17 gene -0.0794
46619 ENSMUSG00000108320 Gm44877 predicted gene 44877 -0.0794
46618 ENSMUSG00000108319 Gm44552 predicted gene 44552 -0.0794
46617 ENSMUSG00000108318 Gm45170 predicted gene 45170 -0.0794
46616 ENSMUSG00000108317 Gm44663 predicted gene 44663 -0.0794
46615 ENSMUSG00000108316 Gm44589 predicted gene 44589 -0.0794

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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