SHOGoiN Cell Transcriptome: GSM1846975

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1846975


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7020001000000000000000-715Sequence Read ArchiveSRP062177SRP062177_T27Fixed single-cell transcriptomic characterization of human radial glial diversityTranscriptomeEmbryonic stem cell (Inner cell mass)HumanEarly embryonic tissueRNA-SeqHiSeq 2500Sequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSG00000198804 MT-CO1 mitochondrially encoded cytochrome c oxidase I 127.4971
2 ENSG00000198727 MT-CYB mitochondrially encoded cytochrome b 89.2310
3 ENSG00000198938 MT-CO3 mitochondrially encoded cytochrome c oxidase III 66.6876
4 ENSG00000198712 MT-CO2 mitochondrially encoded cytochrome c oxidase II 58.9440
5 ENSG00000075624 ACTB actin beta 57.4375
6 ENSG00000210082 MT-RNR2 mitochondrially encoded 16S RNA 46.5364
7 ENSG00000198886 MT-ND4 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 38.7419
8 ENSG00000198786 MT-ND5 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 5 30.0136
9 ENSG00000111640 GAPDH glyceraldehyde-3-phosphate dehydrogenase 26.3103
10 ENSG00000237973 MTCO1P12 mitochondrially encoded cytochrome c oxidase I pseudogene 12 24.5737

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
57171 ENSG00000276874 NA -0.1316
57170 ENSG00000276873 NA -0.1316
57169 ENSG00000276872 NA -0.1316
57168 ENSG00000276871 NA -0.1316
57167 ENSG00000276869 MIR6729 microRNA 6729 -0.1316
57166 ENSG00000276867 NA -0.1316
57165 ENSG00000276866 MIR7151 microRNA 7151 -0.1316
57163 ENSG00000276863 NA -0.1316
10 ENSG00000237973 MTCO1P12 mitochondrially encoded cytochrome c oxidase I pseudogene 12 24.5737
9 ENSG00000111640 GAPDH glyceraldehyde-3-phosphate dehydrogenase 26.3103

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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