SHOGoiN Cell Transcriptome: GSM1868815-3

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1868815-3


Profile download
7020007000000000000000-795Sequence Read ArchiveSRP055810SRP055810_T45Single-Cell RNA-seq Defines the Three Cell Lineages of the Human BlastocystTranscriptomeTrophectodermHumanEarly embryonic tissueRNA-SeqHiSeq 2000Sequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSG00000075624 ACTB actin beta 98.8597
2 ENSG00000198804 MT-CO1 mitochondrially encoded cytochrome c oxidase I 82.7160
3 ENSG00000111640 GAPDH glyceraldehyde-3-phosphate dehydrogenase 72.2922
4 ENSG00000198712 MT-CO2 mitochondrially encoded cytochrome c oxidase II 52.0875
5 ENSG00000210082 MT-RNR2 mitochondrially encoded 16S RNA 51.6544
6 ENSG00000198886 MT-ND4 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 44.7219
7 ENSG00000074800 ENO1 enolase 1 43.9424
8 ENSG00000269968 novel transcript, antisense to GAPDH 37.4329
9 ENSG00000181163 NPM1 nucleophosmin 1 36.4368
10 ENSG00000198727 MT-CYB mitochondrially encoded cytochrome b 35.9505

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
58735 ENSG00000285994 novel transcript, sense intronic to CAMK1D -0.0881
58734 ENSG00000285993 novel transcript, antisense to RNF165 -0.0881
58733 ENSG00000285992 novel transcript -0.0881
58732 ENSG00000285991 novel transcript -0.0881
58731 ENSG00000285990 neurobeachin (NBEA) pseudogene -0.0881
58730 ENSG00000285989 TEC -0.0881
58729 ENSG00000285988 novel transcript, LINP1-LINC00707 readthrough -0.0881
58728 ENSG00000285986 complement factor H related 3 (CFHR3) pseudogene -0.0881
58727 ENSG00000285985 NA -0.0881
58726 ENSG00000285984 novel transcript -0.0881

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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