SHOGoiN Cell Transcriptome: GSM1977399

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1977399


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8020000000000000000000-737Sequence Read ArchiveSRP067661SRP067661_T1Distinct routes of lineage development reshape the human blood hierarchy across ontogenyTranscriptomeCMP++ Myeloid stem cell (CFU-GEMM, CMP) (Cord blood)HumanEmbryonic bloodRNA-Seq, SMARTseqHiSeq 2000Sequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSG00000156508 EEF1A1 eukaryotic translation elongation factor 1 alpha 1 100.8516
2 ENSG00000198804 MT-CO1 mitochondrially encoded cytochrome c oxidase I 76.9293
3 ENSG00000198938 MT-CO3 mitochondrially encoded cytochrome c oxidase III 65.1215
4 ENSG00000100316 RPL3 ribosomal protein L3 54.8726
5 ENSG00000075624 ACTB actin beta 50.7242
6 ENSG00000210082 MT-RNR2 mitochondrially encoded 16S RNA 50.3652
7 ENSG00000198727 MT-CYB mitochondrially encoded cytochrome b 49.3122
8 ENSG00000198712 MT-CO2 mitochondrially encoded cytochrome c oxidase II 44.4834
9 ENSG00000251562 MALAT1 metastasis associated lung adenocarcinoma transcript 1 43.2786
10 ENSG00000111640 GAPDH glyceraldehyde-3-phosphate dehydrogenase 40.3279

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
57057 ENSG00000273767 NA -0.0820
57055 ENSG00000273765 novel transcript -0.0820
57054 ENSG00000273763 marker of proliferation Ki-67 (MKI67) pseudogene -0.0820
57053 ENSG00000273758 MIR6790 microRNA 6790 -0.0820
57050 ENSG00000273750 NA -0.0820
57049 ENSG00000273746 preferentially expressed antigen in melanoma (PRAME) pseudogene -0.0820
57048 ENSG00000273745 MIR6870 microRNA 6870 -0.0820
10 ENSG00000111640 GAPDH glyceraldehyde-3-phosphate dehydrogenase 40.3279
9 ENSG00000251562 MALAT1 metastasis associated lung adenocarcinoma transcript 1 43.2786
8 ENSG00000198712 MT-CO2 mitochondrially encoded cytochrome c oxidase II 44.4834

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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