SHOGoiN Cell Transcriptome: GSM1977412

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1977412


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8020000000000000000000-711Sequence Read ArchiveSRP067661SRP067661_T14Distinct routes of lineage development reshape the human blood hierarchy across ontogenyTranscriptomeGMP CFU-GM (granulocyte-monocyte progenitor, GMP) (Cord blood)HumanEmbryonic bloodRNA-Seq, SMARTseqHiSeq 2000Sequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSG00000156508 EEF1A1 eukaryotic translation elongation factor 1 alpha 1 111.1462
2 ENSG00000198804 MT-CO1 mitochondrially encoded cytochrome c oxidase I 103.7648
3 ENSG00000251562 MALAT1 metastasis associated lung adenocarcinoma transcript 1 61.2537
4 ENSG00000100316 RPL3 ribosomal protein L3 49.1292
5 ENSG00000198727 MT-CYB mitochondrially encoded cytochrome b 45.7992
6 ENSG00000198938 MT-CO3 mitochondrially encoded cytochrome c oxidase III 45.7627
7 ENSG00000210082 MT-RNR2 mitochondrially encoded 16S RNA 43.6828
8 ENSG00000111640 GAPDH glyceraldehyde-3-phosphate dehydrogenase 39.1119
9 ENSG00000198712 MT-CO2 mitochondrially encoded cytochrome c oxidase II 36.8234
10 ENSG00000075624 ACTB actin beta 33.0413

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
57057 ENSG00000271704 BNIP3P20 BCL2 interacting protein 3 pseudogene 20 -0.0789
57056 ENSG00000271702 DnaJ (Hsp40) homolog, subfamily C, member 8, pseudogene -0.0789
57055 ENSG00000271701 epithelial cell transforming sequence 2 oncogene (ECT2) pseudogene -0.0789
57054 ENSG00000271699 SNX29P2 sorting nexin 29 pseudogene 2 -0.0789
57053 ENSG00000271698 novel transcript -0.0789
57052 ENSG00000271696 abhydrolase domain containing 15 (ABHD15) pseudogene -0.0789
57051 ENSG00000271693 platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa), pseudogene -0.0789
57050 ENSG00000271691 novel IGHV pseudogene -0.0789
57049 ENSG00000271686 transportin 3 (TNPO3) pseudogene -0.0789
57048 ENSG00000271681 mitochondrial ribosomal protein L50 (MRPL50) pseudogene -0.0789

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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