SHOGoiN Cell Transcriptome: GSM1987577

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1987577


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3120102010200000000000-082Sequence Read ArchiveSRP067892SRP067892_T7Single-cell RNA-seq reveals distinct maturation stages of the Paneth cell lineageTranscriptome3 week CD24+ cellMouseSmall intestineRNA-SeqNextSeq 500Sequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSMUSG00000075014 Gm10800 predicted gene 10800 229.1574
2 ENSMUSG00000064368 mt-Nd6 mitochondrially encoded NADH dehydrogenase 6 27.9012
3 ENSMUSG00000075015 Gm10801 predicted gene 10801 18.6544
4 ENSMUSG00000095280 Gm21738 predicted gene, 21738 15.6298
5 ENSMUSG00000106106 18s RNA, related sequence 5 14.3952
6 ENSMUSG00000085715 Tsix X (inactive)-specific transcript, opposite strand 12.1730
7 ENSMUSG00000064351 mt-Co1 mitochondrially encoded cytochrome c oxidase I 6.5558
8 ENSMUSG00000097554 Gm26825 predicted gene, 26825 5.5065
9 ENSMUSG00000064341 mt-Nd1 mitochondrially encoded NADH dehydrogenase 1 4.9139
10 ENSMUSG00000049521 Cdc42ep1 CDC42 effector protein (Rho GTPase binding) 1 4.0497

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
54524 ENSMUSG00000117331 exocrine gland-secreting peptide pseudogene -0.0120
54523 ENSMUSG00000117330 ribosomal protein L18A (Rpl18a) pseudogene -0.0120
54522 ENSMUSG00000117329 zinc finger protein 541 (Zfp541) pseudogene -0.0120
54521 ENSMUSG00000117328 novel transcript, antisense to Smoc2 -0.0120
54520 ENSMUSG00000117327 NA -0.0120
54519 ENSMUSG00000117326 zinc ribbon domain containing 1, antisense (Znrd1as) pseudogene -0.0120
54518 ENSMUSG00000117325 Opa interacting protein 5 (Oip5) pseudogene -0.0120
54517 ENSMUSG00000117324 novel transcript, antisense to Dscam -0.0120
54516 ENSMUSG00000117323 novel transcript -0.0120
54515 ENSMUSG00000117322 novel transcript, antisense to Zfp213 -0.0120

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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