SHOGoiN Cell Transcriptome: GSM967508

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM967508


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7020001000000000000000-715Sequence Read ArchiveSRP014428SRP014428_T1Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cellsTranscriptomeEmbryonic stem cell (Inner cell mass)HumanEarly embryonic tissueRNA-seqGenome Analyzer IIxSequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSG00000210082 MT-RNR2 mitochondrially encoded 16S RNA 117.5704
2 ENSG00000198804 MT-CO1 mitochondrially encoded cytochrome c oxidase I 75.7546
3 ENSG00000198938 MT-CO3 mitochondrially encoded cytochrome c oxidase III 66.2782
4 ENSG00000198712 MT-CO2 mitochondrially encoded cytochrome c oxidase II 64.1782
5 ENSG00000198727 MT-CYB mitochondrially encoded cytochrome b 61.5926
6 ENSG00000198886 MT-ND4 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 55.7441
7 ENSG00000111640 GAPDH glyceraldehyde-3-phosphate dehydrogenase 32.3602
8 ENSG00000198899 MT-ATP6 mitochondrially encoded ATP synthase membrane subunit 6 31.2839
9 ENSG00000203396 WDR45-like (WDR45L) pseudogene 30.9847
10 ENSG00000197061 HIST1H4C histone cluster 1 H4 family member c 30.2614

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
58735 ENSG00000285994 novel transcript, sense intronic to CAMK1D -0.0927
58734 ENSG00000285993 novel transcript, antisense to RNF165 -0.0927
58733 ENSG00000285992 novel transcript -0.0927
58732 ENSG00000285991 novel transcript -0.0927
58731 ENSG00000285990 neurobeachin (NBEA) pseudogene -0.0927
58730 ENSG00000285989 TEC -0.0927
58729 ENSG00000285988 novel transcript, LINP1-LINC00707 readthrough -0.0927
58728 ENSG00000285987 NA -0.0927
58727 ENSG00000285986 complement factor H related 3 (CFHR3) pseudogene -0.0927
58726 ENSG00000285985 NA -0.0927

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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