SHOGoiN Cell Transcriptome

No.Project IdProjectAssaySource CellTechnologyData
Project TitleOrganization NameAssay TypeSource Cell TypeSource OrganismAssay TechnologyData Type
1SRP014428Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cellsKarolinska InstitutetTranscriptomeLeucocyteHumanRNA-seqSequence
2SRP018525Genetic Programs in Human and Mouse Early Embryos Revealed by Single-Cell RNA-SequencingHuman Genetics, UCLATranscriptomeBlood cellHumanRNA-seqSequence
3SRP020490Single-cell RNA-Seq reveals dynamic, random monoallelic gene expression in mammalian cellsKarolinska InstitutetTranscriptome16-cell embryo cell (16-cell embryo)MouseRNA-SeqSequence
4SRP022764Quantitative single-cell RNA-seqKarolinska InstitutetTranscriptomeEmbryonic stem cellMouseRNA-SeqSequence
5SRP033135Pseudo-temporal ordering of individual cells reveals regulators of differentiationStem Cell and Regenerative Biology, Harvard UniversityTranscriptomeMyoblast_T0 (Skeletal muscle)HumanRNA-seqSequence
6SRP033139Transcriptome In Vivo Analysis (TIVA) of spatially defined single cells in intact live mouse and human brain tissueUniversity of PennsylvaniaTranscriptomeNeuron (Cerebral cortex)MouseRNA-seqSequence
7SRP033209High throughput quantitative whole transcriptome analysis of distal mouse lung epithelial cells from various developmental stages (E14.5, E16.5, E18.5 and adult)Stanford UniversityTranscriptomeType II pneumocyte (Distal lung epithelium)MouseRNA-seqSequence
8SRP034712Characterization of differentiating adipose cells by high-throughput single-cell Harvard University, HSCRBTranscriptomeAdipose Derived Stem CellHumanRNA-seqSequence
9SRP035326Massively parallel single-cell RNA-Seq for dissecting cell type and cell state compositionsWeizmann Institute of ScienceTranscriptomeDendritic cellMouseRNA-seqSequence
10SRP043513Single Cell RNAseq data and PacBio amplicon sequencing dataTranscriptomeB cell, IgM expressing HumanRNA-seqSequence
11SRP045794Identification of subset-specific dendritic cell progenitors reveals early commitment in the bone marrowSingapore Immunology NetworkTranscriptomeCDP_sorted_CD45+_Lin-_MHC2-_CD11c-_FLT3+_CD115+_CD117intMouseRNA-SeqSequence
12SRP048838Single-Cell mRNA Sequencing Reveals Rare Intestinal Cell TypesMax Planck Institute of Immunobiology and EpigeneticsTranscriptomeSingle cell from whole intestinal organoids (Intestinal gland)MouseRNA-SeqSequence
13SRP050499The Transcriptome and DNA Methylome Landscapes of Human Primordial Germ CellsBiodynamics Optical Imaging Center (BIOPIC), Peking UniversityTranscriptomePrimordial germ cellHumanRNA-seqSequence
14SRP055425Intrinsic age-dependent changes and cell-cell contacts regulate nephron progenitor lifespanCincinnati Children's HospitalTranscriptomeNephron progenitorMouseRNA-SeqSequence
15SRP055440Single Cell Analysis Reveals Unexpected Transcriptional Heterogeneity of Neural Progenitors in the Developing Human CortexBoston Children's HospitalTranscriptomeRadial glia cell (Cerebral cortex)HumanRNA-seqSequence
16SRP055810Single-Cell RNA-seq Defines the Three Cell Lineages of the Human BlastocystCrick InstituteTranscriptomeTrophectodermHumanRNA-SeqSequence
17SRP057196A survey of human brain transcriptome diversity at the single cell levelDep of Biosciences and Nutrition, Karolinska InstituteTranscriptomeCerebral cortex cell (Cerebral cortex (temporal lobe))HumanRNA-seqSequence
18SRP059549Single-cell RNA-seq reveals activation of unique gene groups as a consequence of stem cell-parenchymal cell fusionUniversity of Minnesota-Twin CitiesTranscriptomeMesenchymal Stem Cell (MSC)MouseRNA-SeqSequence
19SRP059940Chromatin dynamics and the role of G9a in gene regulation and enhancer silencing during early mouse developmentUniversity of CambridgeTranscriptomeEpiblast cellMouseRNA-SeqSequence
20SRP061185Single-cell RNA-seq of bone marrow-derived mesenchymal stem cells reveals unique profiles of lineage primingUniversity of Minnesota-Twin CitiesTranscriptomeMesenchymal stem cell (MSC)MouseRNA-SeqSequence
21SRP061902Adult mouse cortical cell taxonomy by single cell transcriptomicsAllen Institute for Brain ScienceTranscriptomeVip Mybpc1 (Cerebral cortex, VISp, all)MouseRNA-SeqSequence
22SRP062177Fixed single-cell transcriptomic characterization of human radial glial diversityAllen Institute for Brain ScienceTranscriptomeEmbryonic stem cell (Inner cell mass)HumanRNA-SeqSequence
23SRP064464Single-cell transcriptomics reveals unique features of human pancreatic islet cell subtypesCeMM Research Center for Molecular Medicine of the Austrian Academy of SciencesTranscriptomePancreatic islet cell (Pancreatic islet)HumanRNA-SeqSequence
24SRP067577Systematic reconstruction of molecular cascades regulating growth plate development using single-cell RNA-seqTsinghua universityTranscriptomeChondrogenic cell (Bone, tibia growth plate)MouseRNA-SeqSequence
25SRP067661Distinct routes of lineage development reshape the human blood hierarchy across ontogenyUniversity Health Network, University of TorontoTranscriptomeCMP++ Myeloid stem cell (CFU-GEMM, CMP) (Cord blood)HumanRNA-Seq, SMARTseqSequence
26SRP067892Single-cell RNA-seq reveals distinct maturation stages of the Paneth cell lineageHubrecht InstituteTranscriptomeLgr5-positive intestinal cell (CBC cell)MouseRNA-SeqSequence
27SRP068586Single-cell RNA-seq of sorted and micro-dissected mouse bone marrow cellsHubrecht InstituteTranscriptomeBone marrow cellMouseRNA-SeqSequence
28SRP070425Use of the Fluidigm C1 platform for RNA sequencing of single mouse pancreatic islet cellsRegeneron Pharmaceuticals, Inc.TranscriptomePancreatic islet cell (Pancreatic islet)MouseRNA-SeqSequence
29SRP125954Mapping human pluripotent stem cell differentiation pathways via high throughput single-cell RNA-sequencingZhejiang UniversityTranscriptomeEmbryonic stem cell (Inner cell mass)HumanRNA-SeqSequence